Gene YPK_3258 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_3258 
SymbolribD 
ID6089811 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp3561755 
End bp3562864 
Gene Length1110 bp 
Protein Length369 aa 
Translation table11 
GC content53% 
IMG OID641598335 
Productbifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase 
Protein accessionYP_001721980 
Protein GI170025475 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis 
TIGRFAM ID[TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.177144 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGCCCG ATGAGTTCTA TATGGCCCGA GCTTTTGAAC TGGCGCGTTT GGGGCGCTTT 
ACGACGTCGC CTAACCCCAA TGTAGGCTGT GTCTTGGTTC GTGATGGCGA GATCGTCGGC
GAAGGTTACC ACTTACGTGC TGGAGAGCCG CATGCTGAAG TGCATGCGTT ACGTATGGCG
GGTGAGAAAG CGCGAGGAGC CACGGCTTAT GTCACTCTCG AGCCGTGTAG CCATTATGGT
CGGACGCCAC CTTGTGCTGA TGCGTTGGTC GCCGCAGGTG TGATACGGGT TGTTGCTGCC
ATGCAGGATC CTAATCCAGA AGTTGCCGGG CGAGGGCTGT ATAAATTAAA ACAGGCCGGT
ATCGCTGTCG ATCATGGCTT GATGTTAGCT GAGGCCGAGG CTGTTAACCT TGGTTTCTTG
AAGCGTATGC GGACTGGTTT CCCTTATGTG CAATTGAAAA TGGCGGCATC ATTGGACGGG
CGTACAGCCA TGGCATCAGG TGAGAGCCAG TGGATTACCT CACCACAGGC ACGCCAGGAT
GTGCAACGCT TTAGGGCCGA GAGTTCAGCT ATTCTCAGTA CCAGTGCCAC AGTATTGGCA
GATGACCCTT CGCTGACGGT ACGCTGGCAG GATTTAGATG CCGAAACGCA GGTTTTGTAT
CCTCATGATA GTGTTCGACA GCCAGTAAAA ATTATACTCG ATAGCCATAA CCGCGTGACT
CCACGGCATA AAGTGATACA GCAAGACGGC CCATGCTGGC TGGCTCGCGT AGATGCCGAT
GATCAGCCAT GGCCTGGCAA TATCGAACAA CTGTTGCTAC CACGTTATGG TAATGGCGTG
GACTTGGTTG TGTTGATGAT GCAATTGGGG AAACGGAATA TTAACTCTGT CTGGGTAGAG
GCTGGGCCAC AACTGGCGGG TGCATTGTTA CAAGCCGGAG TGGTGGATGA GTTAATCCTT
TATATCGCCC CCAAACTCTT GGGCAGTGAT GCGCGTGGAT TATGCGAGCT AGCTGGGCTG
ACGAATTTAT CGCAAGCGCC TGAGTTTGCA TTTAGCGATG TACGGCTGGT CGGTCCGGAC
TTGCGTTTAC GCTTGAAGCC AAAGTATTAA
 
Protein sequence
MQPDEFYMAR AFELARLGRF TTSPNPNVGC VLVRDGEIVG EGYHLRAGEP HAEVHALRMA 
GEKARGATAY VTLEPCSHYG RTPPCADALV AAGVIRVVAA MQDPNPEVAG RGLYKLKQAG
IAVDHGLMLA EAEAVNLGFL KRMRTGFPYV QLKMAASLDG RTAMASGESQ WITSPQARQD
VQRFRAESSA ILSTSATVLA DDPSLTVRWQ DLDAETQVLY PHDSVRQPVK IILDSHNRVT
PRHKVIQQDG PCWLARVDAD DQPWPGNIEQ LLLPRYGNGV DLVVLMMQLG KRNINSVWVE
AGPQLAGALL QAGVVDELIL YIAPKLLGSD ARGLCELAGL TNLSQAPEFA FSDVRLVGPD
LRLRLKPKY