Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_3258 |
Symbol | ribD |
ID | 6089811 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 3561755 |
End bp | 3562864 |
Gene Length | 1110 bp |
Protein Length | 369 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641598335 |
Product | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase |
Protein accession | YP_001721980 |
Protein GI | 170025475 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0117] Pyrimidine deaminase [COG1985] Pyrimidine reductase, riboflavin biosynthesis |
TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain [TIGR00326] riboflavin biosynthesis protein RibD |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.177144 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCAGCCCG ATGAGTTCTA TATGGCCCGA GCTTTTGAAC TGGCGCGTTT GGGGCGCTTT ACGACGTCGC CTAACCCCAA TGTAGGCTGT GTCTTGGTTC GTGATGGCGA GATCGTCGGC GAAGGTTACC ACTTACGTGC TGGAGAGCCG CATGCTGAAG TGCATGCGTT ACGTATGGCG GGTGAGAAAG CGCGAGGAGC CACGGCTTAT GTCACTCTCG AGCCGTGTAG CCATTATGGT CGGACGCCAC CTTGTGCTGA TGCGTTGGTC GCCGCAGGTG TGATACGGGT TGTTGCTGCC ATGCAGGATC CTAATCCAGA AGTTGCCGGG CGAGGGCTGT ATAAATTAAA ACAGGCCGGT ATCGCTGTCG ATCATGGCTT GATGTTAGCT GAGGCCGAGG CTGTTAACCT TGGTTTCTTG AAGCGTATGC GGACTGGTTT CCCTTATGTG CAATTGAAAA TGGCGGCATC ATTGGACGGG CGTACAGCCA TGGCATCAGG TGAGAGCCAG TGGATTACCT CACCACAGGC ACGCCAGGAT GTGCAACGCT TTAGGGCCGA GAGTTCAGCT ATTCTCAGTA CCAGTGCCAC AGTATTGGCA GATGACCCTT CGCTGACGGT ACGCTGGCAG GATTTAGATG CCGAAACGCA GGTTTTGTAT CCTCATGATA GTGTTCGACA GCCAGTAAAA ATTATACTCG ATAGCCATAA CCGCGTGACT CCACGGCATA AAGTGATACA GCAAGACGGC CCATGCTGGC TGGCTCGCGT AGATGCCGAT GATCAGCCAT GGCCTGGCAA TATCGAACAA CTGTTGCTAC CACGTTATGG TAATGGCGTG GACTTGGTTG TGTTGATGAT GCAATTGGGG AAACGGAATA TTAACTCTGT CTGGGTAGAG GCTGGGCCAC AACTGGCGGG TGCATTGTTA CAAGCCGGAG TGGTGGATGA GTTAATCCTT TATATCGCCC CCAAACTCTT GGGCAGTGAT GCGCGTGGAT TATGCGAGCT AGCTGGGCTG ACGAATTTAT CGCAAGCGCC TGAGTTTGCA TTTAGCGATG TACGGCTGGT CGGTCCGGAC TTGCGTTTAC GCTTGAAGCC AAAGTATTAA
|
Protein sequence | MQPDEFYMAR AFELARLGRF TTSPNPNVGC VLVRDGEIVG EGYHLRAGEP HAEVHALRMA GEKARGATAY VTLEPCSHYG RTPPCADALV AAGVIRVVAA MQDPNPEVAG RGLYKLKQAG IAVDHGLMLA EAEAVNLGFL KRMRTGFPYV QLKMAASLDG RTAMASGESQ WITSPQARQD VQRFRAESSA ILSTSATVLA DDPSLTVRWQ DLDAETQVLY PHDSVRQPVK IILDSHNRVT PRHKVIQQDG PCWLARVDAD DQPWPGNIEQ LLLPRYGNGV DLVVLMMQLG KRNINSVWVE AGPQLAGALL QAGVVDELIL YIAPKLLGSD ARGLCELAGL TNLSQAPEFA FSDVRLVGPD LRLRLKPKY
|
| |