Gene YPK_3172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_3172 
Symbol 
ID6088112 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp3467287 
End bp3467745 
Gene Length459 bp 
Protein Length152 aa 
Translation table11 
GC content48% 
IMG OID641598249 
Productputative membrane efflux protein 
Protein accessionYP_001721894 
Protein GI170025389 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGATC GTTCTGATAC CGGATGTCAG CAGCCCGTTA ATGTTTCAGT CAAACGTACA 
TCTTTCTCTA TTTTGGGTGC TATCAGCGTA TCTCACCTAC TCAACGATAT GATCCAGTCG
CTGATCCTGG CGATTTATCC TTTATTACAA GCTGAGTTCT CATTGAGTTT TGCTCAAATA
GGATTGATCA CGCTAACTTA CCAATTGACG GCTTCGTTAC TACAACCGCT GATTGGCTTA
TATACGGATA AACACCCCCA GCCATACTCA TTACCCATCG GTATGGGGTT CACGCTGTCT
GGCATATTAC TGCTGGCAGT AGCCACAACC TTCCCGGTGG TATTATTAGC GGCAGCATTG
GTCGGTACTG GCTCTTCTGT ATTCCACCCA GAATCATCAC GAGTCGCCCG TATGGCATCC
GGTGGGCGCC ATGGTTGTGC CCAGAAAACC CCCAGCTAG
 
Protein sequence
MTDRSDTGCQ QPVNVSVKRT SFSILGAISV SHLLNDMIQS LILAIYPLLQ AEFSLSFAQI 
GLITLTYQLT ASLLQPLIGL YTDKHPQPYS LPIGMGFTLS GILLLAVATT FPVVLLAAAL
VGTGSSVFHP ESSRVARMAS GGRHGCAQKT PS