| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3128 |
|---|
| Symbol | |
|---|
| ID | 6089117 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 3422433 |
|---|
| End bp | 3423587 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641598206 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_001721852 |
|---|
| Protein GI | 170025347 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.169868 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCTCA AACAAAGATA CAGTAAGTGG TACTGTGATT TCGTTCGCCC GAACGGGGAG
AGAGTTAGAC GCTGCCTTGG TACGGCAGAC AAGAAACAAG CGCAGGAACT CTTCGATCAG
CTAAAAGCAG AAGCATGGAG AGTGGATAAG TTAGGTGAAA TAGCTGAACA CACTTTTGAT
GAAACATGCT TGCGCTGGCT GACAGAAAAA GAGCATAAGC GCTCTTTGGA TGATGACCGA
ACGAAGATTG AATTTTTCCG TGGTCATTTT TCTGGAATGC CAATATCCAG CATTACCGAA
GATAAGATTA TGAAAGCGGT GTCAAGAATG CCGAACAGGA AGCATAGGCA AATCTGGGAA
TCAAAAAGGG ATGCGGCATT AATGAAGAAA AAACCAATCC CTAGCTATGT AGAAAAGCAA
GTTTCACAGG CAACAAGAAG CCAGCACCTT TCATTTATAC GCAGTCTGTT ACGAGCAGCA
GCGGACGAAT GGAAGTGGTT AGCTAAAGCG CCAGTGATCA AGACCAGAAA ACCACAGAGC
AAACGGATAC GTTGGCTTAC AAAAGATGAG GCTGTAACCT TAATCAATTG TATGCCTGAG
AACTTCCGCC CTGTAGTGGT CTTTGCCTTG GCCACTGGAC TTCGAAGATC GAACATTCTG
GATCTGGAAT GGTCGCAAAT CGATATGCAA AGAAAGGTTG CATGGATACA CCCAGAGAAT
GCTAAAGCGG GTAAGGCAAT TGGCGTAGCT CTGAATGATA TGTCATGCAA GGTATTACGT
GAACAGATAG GCCGAAGTTC GAGGTATGTT TTTGTACACA CATCGGCATG GCACAGAGCA
GATGGGACAA AAACCGCTGA GGTTAGAAAA ATGCGCGTTG ATGACAATAC AGCATGGAGA
ACTGGATTAA AGCGCTCAGG AATTACTGAT TTCCGTTTTC ACGATTTGCG GCATACATGG
GCAAGCTGGT TAGTTCAAGC TGGGGTGCCA CTATCAGCAC TTCAAGAAAT GGGGGGGTGG
GAAAGCATAG AAATGGTACG CAGGTATGCT CACTTATCAC CGAACCATTT AACTGAACAT
GCGCGTAAAA TTGATGAGGT GATGGGGATC AATGTCACCA ATCTGACACT TTTAAAAAAC
GTAGCTGAAA ATTAG
|
|---|
| Protein sequence | MALKQRYSKW YCDFVRPNGE RVRRCLGTAD KKQAQELFDQ LKAEAWRVDK LGEIAEHTFD
ETCLRWLTEK EHKRSLDDDR TKIEFFRGHF SGMPISSITE DKIMKAVSRM PNRKHRQIWE
SKRDAALMKK KPIPSYVEKQ VSQATRSQHL SFIRSLLRAA ADEWKWLAKA PVIKTRKPQS
KRIRWLTKDE AVTLINCMPE NFRPVVVFAL ATGLRRSNIL DLEWSQIDMQ RKVAWIHPEN
AKAGKAIGVA LNDMSCKVLR EQIGRSSRYV FVHTSAWHRA DGTKTAEVRK MRVDDNTAWR
TGLKRSGITD FRFHDLRHTW ASWLVQAGVP LSALQEMGGW ESIEMVRRYA HLSPNHLTEH
ARKIDEVMGI NVTNLTLLKN VAEN
|
|---|
| |