Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_3072 |
Symbol | |
ID | 6088049 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 3378072 |
End bp | 3380453 |
Gene Length | 2382 bp |
Protein Length | 793 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 641598150 |
Product | glycoside hydrolase family 3 protein |
Protein accession | YP_001721796 |
Protein GI | 170025291 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1472] Beta-glucosidase-related glycosidases |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCTGA ATAAAACAGG TTTTTTCACA GCGTTTACTT TCCTTTCAGC TCCCGTTTGG GCCACCCCTC AGTTAAAAGA GGCTGAGTCT ATTCCCTCTG TCATCGCGGC AATGACACTG GAAGAAAAAG CAGCCTTTGT TTCCGGCACG GGTATGAATA ACGCAGAAAA AGTTGCCGGT GCTGCCGGTT CAACCCTGGC GATACCAAGA TTGGGGATAC CACAGATTGT TTTTGCCGAT GGGCCGGTAG GTGTCAGGCT GGGGGCAGGA CCCACCGGCG GTGAGAAGCG CTTTGCCACA GGGTTCCCAG TGTCGGTGGC AATGGCGGCA ACCTGGGACC CCGCCATTAT TAAGCGTGTC GGCGGAGCCA TTGGTGATGA AGCCAAGCGA TATGGTGTGG ATTTAATTCT CGGTCCTGCG ATTAATATTC AGCGCCACCC ATTGAATGGG CGTAATTTCG AATATTTCAC AGAAGACCCC TTACTCAATG CCATCATGAC GGCCAGTTAT ATTGACGGTA TGCAGACCGA GGGCGTGGGC GCAGTGCTCA AACATTTTGC CGCCAACAAT CAGGAAACAC GCCGTCAGAT AGTCAACGAG ATTATTTCAG ACCGTGCGCT ACATGAAATC TATTTCCCCG GTTTCGAATA TGCCATGGAA AAGGCGCAAC CTTGGGCAGT AATGAGCTCT TATCCATCAA TTAATGGGAC ACCATCCTCG CAAAATCCCT GGTTATTAAA GGATGTCTTG CGCCAACAAT GGAAGTTCGA TGGCTTTGTC ATGTCAGATT GGTATGGTGT GGCCGATCCG GTCAGCGCAT TGAAAGGGGG TAACGATCTC AATATGCCGG GTGGGCGCAC ACCAGACGAC TCACTATTCC TAACACCCAA TACCGATCCT AAAGACGTGG TGTTAGCGGC GCTAAAGTCT GGTGAGCTAA CCCAAGACCA GATAGACGAA AATATTCGCA ATATCCTCAA TGTCGTGATC AAAACTCACC GGTTCAAAAA CGGGGACGCG GCCGTGATGC CAGAACCTGT CGATCATTCA GCATTGGCGC GACAAATTGC AGCAGATTCA ATGGTATTAC TAAAAAATGA TGCACAAACC CTCCCAATGA AAGCCACCTT CCGCGTTGCC GCTTTCGGTC AAAATATTGA CAATTTCTTT GTAACCGGAG GGGGGAGCGC AGAGGTCAAT ATTGATCCCA AACGCTTGGT AACACTGCCA CAGGGCCTGA AAAACGCAGG GATAGCGCTC ATCAGGCAGA TTGGGGATCA AACGTTGGAT GAACCGGTTA ACCAGCCTGT TATCACTAAA GCAGCACAAC AGAGTGATAT CGCCCTGATT TCGATCGGCC GCAGTTCAAC AGAGGGGGCT GATCGCTACT CTATGGCGAT GCATACCGCT GAAGTGGCAA TGATTCAAAA GGTGGCCTCA GCGTTCCATC AGCAGAATAA AAAGGTGGTG GTTCTGCTCA ATATTGGTTC GCCGATAGAA ATGGCCTCTT GGGAACAATA TGCTGATGCC ATTCTTCTCA CCTGGCAACC CGGTGAACAG GCAGGAAATG CGGTTGCCGA TATTCTGCTT GGTAAGGTAA ATCCTTCGGG TAAATTGCCG CTAACCTTCC CGAAACGACT CGAAGATTCA CCAAGCTTTG GTAACTACCC TGGTAACGCT AAAACAGTTA TCTATGGTGA AGGGATCTAT GTCGGCTATC GCTACTTTGA TACCAAGCGC ATTGCCCCGA TGTATCCATT CGGTTATGGC CTTTCTTATT CCACAGTGAA TTATGGGAAA ATCAGCCCAG AAAAACCGGT ATTCAACATC GATACAGAGA ATAGTATTGA GGTCAGTATC CCTGTACGTA ATACCTCCGG TATCGATACA AAAGAGGTTG TGCAGCTTTA TGTTCATGAC AATGCCTCAC GCCTTGATCG GCCAGAACAG GAACTGAAAG CATTTGAAAA AGTCAGCCTG TCGGCGGGAG AGGAAAAACG CGTGGCCTTC AAACTGGATA AACGCGCGTT CTCTTATTAC GATGAGGATA AAAACAACTG GGTGCTTGAA CCGGGGCTCT TCACACTGCG CATTGGGCGT TCGTCAAGAG ATATCCATGC AGAAACACCT CTGATTGTGA AATCCTCGAC CCCAGCTTTC TCGTTTGATA CCCCCTGGAT TGACATCCAG ACGTATGAAA AAGCGGCCAC GATCGTCGCC CGTTTTATCG GTGATGAGCA AACTAACGCT TGGATTTATG GCAACCCAAC ACTGGGTGAT AAACTGGAAG ATGCCCTGAA ACTGAAACCT GAATTCGCTA AAGATGAGGC GAAAAGGCAG AAACTGAAGC AGGAAATCTT ACAAGAAATC AATTCATTGT AA
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Protein sequence | MNLNKTGFFT AFTFLSAPVW ATPQLKEAES IPSVIAAMTL EEKAAFVSGT GMNNAEKVAG AAGSTLAIPR LGIPQIVFAD GPVGVRLGAG PTGGEKRFAT GFPVSVAMAA TWDPAIIKRV GGAIGDEAKR YGVDLILGPA INIQRHPLNG RNFEYFTEDP LLNAIMTASY IDGMQTEGVG AVLKHFAANN QETRRQIVNE IISDRALHEI YFPGFEYAME KAQPWAVMSS YPSINGTPSS QNPWLLKDVL RQQWKFDGFV MSDWYGVADP VSALKGGNDL NMPGGRTPDD SLFLTPNTDP KDVVLAALKS GELTQDQIDE NIRNILNVVI KTHRFKNGDA AVMPEPVDHS ALARQIAADS MVLLKNDAQT LPMKATFRVA AFGQNIDNFF VTGGGSAEVN IDPKRLVTLP QGLKNAGIAL IRQIGDQTLD EPVNQPVITK AAQQSDIALI SIGRSSTEGA DRYSMAMHTA EVAMIQKVAS AFHQQNKKVV VLLNIGSPIE MASWEQYADA ILLTWQPGEQ AGNAVADILL GKVNPSGKLP LTFPKRLEDS PSFGNYPGNA KTVIYGEGIY VGYRYFDTKR IAPMYPFGYG LSYSTVNYGK ISPEKPVFNI DTENSIEVSI PVRNTSGIDT KEVVQLYVHD NASRLDRPEQ ELKAFEKVSL SAGEEKRVAF KLDKRAFSYY DEDKNNWVLE PGLFTLRIGR SSRDIHAETP LIVKSSTPAF SFDTPWIDIQ TYEKAATIVA RFIGDEQTNA WIYGNPTLGD KLEDALKLKP EFAKDEAKRQ KLKQEILQEI NSL
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