Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_3064 |
Symbol | |
ID | 6090918 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 3367976 |
End bp | 3369892 |
Gene Length | 1917 bp |
Protein Length | 638 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641598144 |
Product | outer membrane autotransporter |
Protein accession | YP_001721790 |
Protein GI | 170025285 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACAAAA CATTATTGGC CGGTGCTATC AGTCTATCTT TAGTTACATT ACCTGTTCAG GTATTGGCTT TTACACCGAA TGTGGTGGGA ATAACTGTCA ACGATGAAGT CGTCATTCAT GGTATACAGA ATGTGCGCGA CGGCGGAGTC ATTAATAATG GGCTGGTTAG TGACAATGCC GCAATTACTG TCACCAACGG GAGCAGTGCT GGTACGGCAA ATAATACTAC CGTGGGTGAT AAAGGCTGGT TACAGATTAC CGGTGCTCTG GCGACGGGTA CCATTGTTAA TCAAGGCGGG CTGCTTGACA CCAAAACGGC GGGTACCGTA ATAGATAGCC AAATTAATGA TGGCGGCCAT ATGACTCTGG GACTTAATAG CCAGTCTAAA GGCTACCTCA ATATAGCGGC TGGCGCAGAA CTTTTTGTTA CCAACAACGA TCCATACACC TCCGATGTGA CCACCCATAA CCCCGCACTG CCTGCCAATG TTATGATTGA GAATCTCAAC GTCGCGGGTC TGGTCGAAAT CGGCCCTTCC TGGAAGGGCA CGAGTATCGT GCCGCTTCCC CTCTCTGACG TTTTAGGGCC GGTGCTGGTT ACCCGAATCA ATAATGTGAC TTTGCAAGGG GGGGATATCA ATTTAATGGC CTATTCTGCT GGTGGGCAAT TTAACCGGCT GGAGATAGAA AATTTGTCTG GTCAGGGTAA TTTTGCGATG ACAACCCAGC TTGCCAGCAA TACCGGGGAT TTCATTACGG TCTCACAGCA GGCGACCGGC CAATTTGGTA TTACCGTTCA GGACAGCGGT AAAGAGCCGC AATCTGCCGA CAACCTGGCA CTGGTACATA TTAATCGTGG TGATGCTCAG TTCCGTTTAC TCAATACAGG CGGAGTGGTG GATTTAGGTG TTTACCAATA CGGGCTATAT AGTCAGGAAA GCAATGGCAG CACTGACTGG TATCTGGCAA CTAGCACAGA AGAACTGCCT GGTACAACAC CGAACGTAAC CGCTCCAATG CTCAGTTCCG CAGCACAAGG TGTGCTGAAT ATGGCAGCGG CACCGCGGCA TATCCTGAAT GCGGAATTGA GTACCTTGCG TCAGCGCCAA GGCGAGTTGA AGGCAGATGC GGAAGGGACT GTTGGCGTTT GGGCGCGTTA CCTTACAGAT GACAGCCGGT TGTCTGATAA TAAAAATATC GCTTTCAAGA ATACCTTAAG TGGCATGGAA ATTGGGGCCG ATAAACAACT TGGATTAAAC CGGGGTAATA TGTTGATCGG AGCATTTACC TCCTACAGTT CATCTGATGT CAAATCCACC CACGGCGCTA ATGGTGATAT TCGCAGTTAC GGTGGTGGCG TCTATCTGAC CTATTTGGAT CAAAGCGGAT TTTATGTTGA TACGGTGCTA AAAGCTAACC GCTTTAATAA TAAGATGAAT ACACAGGAAA CCCGTGGCGA ATATAACCAG AATGCTCTTA CCACCTCAGT AGAAAGTGGT TATCAATGGC CTGTTTATGC CAATCTGGTG CTCGAACCCT ATGGAAAGGT GAGTTATTCA CGTATTGGTA GCGCAGATTA TACTCTCAGT AACGGCATGG TAGCGGAAGT GGCGAAAGCC GATAGCGTGC AAGGCGAGTT AGGCACGGTA CTCGCCGCCT CTTACAGCAT TAACCAAATG ACGATAAAGC CTTATATTAA ACTGGCTATT ACCCGTGAAT TTACCAAAAG TAATGCTGTA GCGATTAACA ACATTGGTTT CGATAATGAT TTCTCCGGTA ATGTCGGTAA ATATGGCGTA GGCATAAATG CGACGGTAGC CAATAACACC GCCATTTTTG CTGAAGTGGA TTATCTCAAT GGTTCAAAAA TTGAAACACC GGTAACTGCC AATATCGGTT TCCGCCTTCG GTTCTAA
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Protein sequence | MDKTLLAGAI SLSLVTLPVQ VLAFTPNVVG ITVNDEVVIH GIQNVRDGGV INNGLVSDNA AITVTNGSSA GTANNTTVGD KGWLQITGAL ATGTIVNQGG LLDTKTAGTV IDSQINDGGH MTLGLNSQSK GYLNIAAGAE LFVTNNDPYT SDVTTHNPAL PANVMIENLN VAGLVEIGPS WKGTSIVPLP LSDVLGPVLV TRINNVTLQG GDINLMAYSA GGQFNRLEIE NLSGQGNFAM TTQLASNTGD FITVSQQATG QFGITVQDSG KEPQSADNLA LVHINRGDAQ FRLLNTGGVV DLGVYQYGLY SQESNGSTDW YLATSTEELP GTTPNVTAPM LSSAAQGVLN MAAAPRHILN AELSTLRQRQ GELKADAEGT VGVWARYLTD DSRLSDNKNI AFKNTLSGME IGADKQLGLN RGNMLIGAFT SYSSSDVKST HGANGDIRSY GGGVYLTYLD QSGFYVDTVL KANRFNNKMN TQETRGEYNQ NALTTSVESG YQWPVYANLV LEPYGKVSYS RIGSADYTLS NGMVAEVAKA DSVQGELGTV LAASYSINQM TIKPYIKLAI TREFTKSNAV AINNIGFDND FSGNVGKYGV GINATVANNT AIFAEVDYLN GSKIETPVTA NIGFRLRF
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