| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3060 |
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| Symbol | |
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| ID | 6089821 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 3366134 |
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| End bp | 3366613 |
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| Gene Length | 480 bp |
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| Protein Length | 159 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 641598140 |
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| Product | Hcp1 family type VI secretion system effector |
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| Protein accession | YP_001721786 |
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| Protein GI | 170025281 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTAATT TGATTTATGC AAGTGTTAAT GGTAAAAAAC AAGGTTTAAT ATCTGCCGGA
TGCTCGTCAC TCAACTCTAT TGGTAATCGG TGCCAGGCAG GTCATGAAGA TCAAATACAG
GTATTAAGTT TAAATCATAG TATAAGCCGC CAACAGAATG TAGCTCATCA CCCTGTTCAT
TTTGTTAAGC CTATAGATAA GTCATCTCCA TTGCTAGGCG TGGCAATATC TGAAAATGAA
CGAATAGATG TTGTCTTTTA TTTTTATAGA GTAAATTCTG CTGGGCAGTT GGAACTTTAT
TATGAAGTTA AACTGACAGA TGCGAGTATT GTAGATATCA CCAGTGTTTA TCCACACTCA
ATAGATAATA ATGAAATGAT ACCGTATGAA AAAATTCAAT TAAAATATAA ATCCATAGCG
TGGGATCACA AAAGTGCGGG TACTTCTGGT TACAGTGTAT GGGAAGATAG GGTTTACTAG
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| Protein sequence | MSNLIYASVN GKKQGLISAG CSSLNSIGNR CQAGHEDQIQ VLSLNHSISR QQNVAHHPVH
FVKPIDKSSP LLGVAISENE RIDVVFYFYR VNSAGQLELY YEVKLTDASI VDITSVYPHS
IDNNEMIPYE KIQLKYKSIA WDHKSAGTSG YSVWEDRVY
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