| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_3021 |
|---|
| Symbol | |
|---|
| ID | 6088356 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 3322083 |
|---|
| End bp | 3323978 |
|---|
| Gene Length | 1896 bp |
|---|
| Protein Length | 631 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641598101 |
|---|
| Product | penicillin-binding protein 2 |
|---|
| Protein accession | YP_001721747 |
|---|
| Protein GI | 170025242 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0768] Cell division protein FtsI/penicillin-binding protein 2 |
|---|
| TIGRFAM ID | [TIGR03423] penicillin-binding protein 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00366199 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAG AACCTAACCC TTTTCGCGAC TATTCGGCTG AATCAGCCCT GTTTGTCCGC
CGCGCCGTAG TGGCTTTTCT GGGTATCCTG CTACTGAGCG GGGTACTGGT TGCTAACCTC
TATAATTTGC AAATAGTCCG TTTCGACGAT TACAGCACCC GCTCCAACGA CAACCGCATC
AAACTGGTTC CTATCGCCCC TAGCCGTGGC ATGATATTTG ACAGAAATGG CACACCACTG
GCATTAAACC GCACCATCTA TCAATTAGAG TTGATGCCGG AAAAGATCGA AAACTTGTCA
GCCACCCTCA ATGCGCTGCG CCCAATAGTG GATCTGACTG ACGACGATAT CGCTAACTTT
GAAAAAGAGC GCAAACGCTC ACGTCGCTTT ACCTCTATTG CCGTTAAAAC ACCGTTGACC
GAGGTGCAAG TCGCCCGTTT TGCAGTGAAT CAATTCCGCT TCCCCGGAAT TGAAGTCAAA
GGCTATCAAC GTCGCTTCTA CCCGTATGGC TCCGCCCTGA CCCACGTGAT TGGCTATGTC
TCTAAAATTA ACGATAAAGA TGTCGAACGG TTGGATAAAG AAGGCATTCT CCCCAATTAT
GCTGCGACCC ACGATATCGG TAAGTTGGGT ATTGAACGCT ATTATGAATC CACCTTACAT
GGCAAAACTG GTTATGAAGA AGTTGAAGTC AATAACCGAG GCCGGGTAAT CCGCCAATTA
CATGAGCAAC CGCCACAAGC AGGTAAAGAT ATTTATCTGA CTCTCGATCT GAGTCTACAA
ATCTATATCG AGAAGTTACT CAGTGGCAGC CGTGCTGCGG TCGTCGTCAC AGACCCACGC
ACCGGCGGGA TCCTGGCCTT GGTATCAAAC CCAAGCTATG ACCCGAACCT GTTTGTCGAC
GGCATCTCCA ACAAAGATTA TCAAGGGTTG CTTAACGATA CGAACCGCCC CTTAATCAAT
CGGGCAACCC AAGGCGTTTA TCCACCGGCA TCAACCGTGA AACCGTACAT CGCAGTGTCA
GCACTGAGTG CCGGGGTTAT CACCAAAAAC ACCAGCCTGT TCGATCCTGG TTGGTGGCAA
CTGCCCGGTT CGGAAAAGCG CTACCGTGAC TGGAAAAAAT GGGGCCATGG CCGCCTGAAC
GTCACCAAAG CACTGGAAGA ATCGGCAGAT ACCTTCTTCT ACCAAGTCGC CTATGATATG
GGCATTGATC GCTTATCATC TTGGATGAGC AAATTCGGGT ACGGTGAATA TACTGGCATT
GATTTATCCG AAGAGCGTGC GGGTTTAATG CCAACACGCG AGTGGAAGCA AAAGCGCCAT
AAAAAGCCTT GGTATCAGGG TGATACCATT CCGGTAGGTA TTGGCCAGGG TTATTGGACT
GCGACGCCAA TCCAGATGGC TAAAGCCTTA ATGACCCTGA TTAATGATGG CACAGTCAAG
ACACCTCACC TGTTGCAAAG CACCCGGATT GATGGCGTCT TAGTGCCTTA TAAGCAGGAA
GACAGTACGC AGATTGGGAG TATCAATTCT GGCTATTGGG AAATTGCTAA AGACGGCATG
TATGGCGTAG CGAACCGCCC GAACGGTACT GGCCGCAAGT TTTTTGAAGG TACACCTTAT
AAGGCAGCGG CGAAATCGGG TACCGCACAG GTTTACAGTT ATGAAACCTA TAATGCCAGT
AAAGTGGCAG AACACCTGCG CGACCATAAG TTAATGGTTG CGTTTGCTCC CTATGAGAAC
CCTACGGTAT CCGTTGCAAT AATCTTGGAA AATGGAGGCG CGGGGCCTGC GGTAGGGACC
ATTACCCGTC AGATCCTCGA CCATATCTTG TTGGGCGATA ATAATACTGA ATTACCGGAT
GCGGTTCCTC TGCCTCCTGG CGTTGAAGCA GATTAG
|
|---|
| Protein sequence | MKKEPNPFRD YSAESALFVR RAVVAFLGIL LLSGVLVANL YNLQIVRFDD YSTRSNDNRI
KLVPIAPSRG MIFDRNGTPL ALNRTIYQLE LMPEKIENLS ATLNALRPIV DLTDDDIANF
EKERKRSRRF TSIAVKTPLT EVQVARFAVN QFRFPGIEVK GYQRRFYPYG SALTHVIGYV
SKINDKDVER LDKEGILPNY AATHDIGKLG IERYYESTLH GKTGYEEVEV NNRGRVIRQL
HEQPPQAGKD IYLTLDLSLQ IYIEKLLSGS RAAVVVTDPR TGGILALVSN PSYDPNLFVD
GISNKDYQGL LNDTNRPLIN RATQGVYPPA STVKPYIAVS ALSAGVITKN TSLFDPGWWQ
LPGSEKRYRD WKKWGHGRLN VTKALEESAD TFFYQVAYDM GIDRLSSWMS KFGYGEYTGI
DLSEERAGLM PTREWKQKRH KKPWYQGDTI PVGIGQGYWT ATPIQMAKAL MTLINDGTVK
TPHLLQSTRI DGVLVPYKQE DSTQIGSINS GYWEIAKDGM YGVANRPNGT GRKFFEGTPY
KAAAKSGTAQ VYSYETYNAS KVAEHLRDHK LMVAFAPYEN PTVSVAIILE NGGAGPAVGT
ITRQILDHIL LGDNNTELPD AVPLPPGVEA D
|
|---|
| |