Gene YPK_3005 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_3005 
Symbol 
ID6088987 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp3305244 
End bp3306773 
Gene Length1530 bp 
Protein Length509 aa 
Translation table11 
GC content48% 
IMG OID641598085 
Product(dimethylallyl)adenosine tRNA methylthiotransferase 
Protein accessionYP_001721731 
Protein GI170025226 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0621] 2-methylthioadenine synthetase 
TIGRFAM ID[TIGR00089] RNA modification enzyme, MiaB family
[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.187543 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTCCCTA ACGACGAAGC CTTTGCGACT CTCTACTACA ACGGAGATTA TCTACCACAA 
CGGAGTACCG CACGGAACGA GGTGATTTTG ATGATGAATA ACCCGATGAC TAAAAAACTG
CATATCAAAA CCTGGGGTTG CCAGATGAAT GAATACGATT CATCTAAAAT GGCAGATCTC
TTGGCCAGTA CCCATGGCTA CCAGTTAACC ACCATCCCGG AAGAAGCGGA TTTACTGCTG
CTAAATACCT GTTCTATCCG GGAAAAAGCA CAGGAAAAAG TATTCAGCCT GCTAGGGCAA
TGGAAATTAT TGAAAGAGAA AAACCCGCAG TTGATTATTG GGGTCGGTGG TTGCGTGGCG
TCACAGGAAG GTGAACAATT GCGCCAGCGC GCCCCCTGTG TCGATGTCAT CTTCGGGCCA
CAAACGCTGC ATCGTTTACC GGAAATGATT AACCACGTGC AAGAAACGAA TAGCCCTGTC
GTGGATATCA GTTTTCCCGA AATTGAAAAA TTTGACCGTT TGCCAGAACC ACGGGCTGAA
GGCCCAACTG CGTTTGTTTC GATCATGGAA GGCTGCAATA AATATTGTAC ATTCTGTGTC
GTACCCTACA CCCGAGGCGA GGAAGTCAGC CGTCCAAGCG ATGACATTCT TTTTGAAATC
GCCCAGTTAG CCGCTCAAGG CGTACGTGAA GTCAACTTAC TCGGCCAGAA TGTTAACGCC
TACCGCGGGG CAACCTACGA TGGCGATATC TGTAGTTTTG CCGAGCTGTT GCGTTTGGTT
GCTGCCATTG ATGGTATCGA TAGGATACGA TTTACCACCA GCCACCCCAT TGAGTTTACT
GACGATATCA TTGATGTTTA TCGCGATACG CCTGAATTGG TGAGCTTCCT GCATTTGCCG
GTACAAAGCG GTTCTGACCG TATTTTGACC ATGATGAAGC GTGCCCATAC CGCCCTGGAA
TACAAAGCCA TCATCCGCAA ACTGCGTCAG GCGCGCCCTG ATATCCAGAT AAGTTCTGAT
TTTATTGTCG GCTTCCCTGG TGAAACCCAG CAGGATTTTG AACAGACCAT GAAACTGGTC
GCAGATATTC ATTTTGATAC CAGCTACAGC TTTATTTACT CCCCGCGTCC CGGCACACCA
GCGGCTGATT TACCCGACAA TGTGTCCGAA GAGGAGAAAA AACAGCGGCT ACATATCCTG
CAACAACGCA TTAGCCAACA GGCGATGGAA ATTAGCCGTA AGATGGTAGG GACAGTACAG
CGTGTTTTGG TGGAGGGGAC CTCTCGCAAA AATGTCATGG AACTGGCCGG GCGTACGGAA
AACAACCGCG TCGTGAACTT TGAGGGTTCA CCCGACATGA TTGGTAAATT CGTTGATGTC
GAAATTGTTA ACGTTTATGC CAGTTCACTG CGCGGCATTT TACTGCGTAC AGAAGATCAG
ATGGACCTGC GAACCCACGA GTCACCGCAA TCGGTGATTG CTCGCACCCG TAAAGAAAAT
GAAATTGGTG TAGGTATTTA TCAGCCTTAA
 
Protein sequence
MLPNDEAFAT LYYNGDYLPQ RSTARNEVIL MMNNPMTKKL HIKTWGCQMN EYDSSKMADL 
LASTHGYQLT TIPEEADLLL LNTCSIREKA QEKVFSLLGQ WKLLKEKNPQ LIIGVGGCVA
SQEGEQLRQR APCVDVIFGP QTLHRLPEMI NHVQETNSPV VDISFPEIEK FDRLPEPRAE
GPTAFVSIME GCNKYCTFCV VPYTRGEEVS RPSDDILFEI AQLAAQGVRE VNLLGQNVNA
YRGATYDGDI CSFAELLRLV AAIDGIDRIR FTTSHPIEFT DDIIDVYRDT PELVSFLHLP
VQSGSDRILT MMKRAHTALE YKAIIRKLRQ ARPDIQISSD FIVGFPGETQ QDFEQTMKLV
ADIHFDTSYS FIYSPRPGTP AADLPDNVSE EEKKQRLHIL QQRISQQAME ISRKMVGTVQ
RVLVEGTSRK NVMELAGRTE NNRVVNFEGS PDMIGKFVDV EIVNVYASSL RGILLRTEDQ
MDLRTHESPQ SVIARTRKEN EIGVGIYQP