Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_3005 |
Symbol | |
ID | 6088987 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 3305244 |
End bp | 3306773 |
Gene Length | 1530 bp |
Protein Length | 509 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641598085 |
Product | (dimethylallyl)adenosine tRNA methylthiotransferase |
Protein accession | YP_001721731 |
Protein GI | 170025226 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0621] 2-methylthioadenine synthetase |
TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family [TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.187543 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTCCCTA ACGACGAAGC CTTTGCGACT CTCTACTACA ACGGAGATTA TCTACCACAA CGGAGTACCG CACGGAACGA GGTGATTTTG ATGATGAATA ACCCGATGAC TAAAAAACTG CATATCAAAA CCTGGGGTTG CCAGATGAAT GAATACGATT CATCTAAAAT GGCAGATCTC TTGGCCAGTA CCCATGGCTA CCAGTTAACC ACCATCCCGG AAGAAGCGGA TTTACTGCTG CTAAATACCT GTTCTATCCG GGAAAAAGCA CAGGAAAAAG TATTCAGCCT GCTAGGGCAA TGGAAATTAT TGAAAGAGAA AAACCCGCAG TTGATTATTG GGGTCGGTGG TTGCGTGGCG TCACAGGAAG GTGAACAATT GCGCCAGCGC GCCCCCTGTG TCGATGTCAT CTTCGGGCCA CAAACGCTGC ATCGTTTACC GGAAATGATT AACCACGTGC AAGAAACGAA TAGCCCTGTC GTGGATATCA GTTTTCCCGA AATTGAAAAA TTTGACCGTT TGCCAGAACC ACGGGCTGAA GGCCCAACTG CGTTTGTTTC GATCATGGAA GGCTGCAATA AATATTGTAC ATTCTGTGTC GTACCCTACA CCCGAGGCGA GGAAGTCAGC CGTCCAAGCG ATGACATTCT TTTTGAAATC GCCCAGTTAG CCGCTCAAGG CGTACGTGAA GTCAACTTAC TCGGCCAGAA TGTTAACGCC TACCGCGGGG CAACCTACGA TGGCGATATC TGTAGTTTTG CCGAGCTGTT GCGTTTGGTT GCTGCCATTG ATGGTATCGA TAGGATACGA TTTACCACCA GCCACCCCAT TGAGTTTACT GACGATATCA TTGATGTTTA TCGCGATACG CCTGAATTGG TGAGCTTCCT GCATTTGCCG GTACAAAGCG GTTCTGACCG TATTTTGACC ATGATGAAGC GTGCCCATAC CGCCCTGGAA TACAAAGCCA TCATCCGCAA ACTGCGTCAG GCGCGCCCTG ATATCCAGAT AAGTTCTGAT TTTATTGTCG GCTTCCCTGG TGAAACCCAG CAGGATTTTG AACAGACCAT GAAACTGGTC GCAGATATTC ATTTTGATAC CAGCTACAGC TTTATTTACT CCCCGCGTCC CGGCACACCA GCGGCTGATT TACCCGACAA TGTGTCCGAA GAGGAGAAAA AACAGCGGCT ACATATCCTG CAACAACGCA TTAGCCAACA GGCGATGGAA ATTAGCCGTA AGATGGTAGG GACAGTACAG CGTGTTTTGG TGGAGGGGAC CTCTCGCAAA AATGTCATGG AACTGGCCGG GCGTACGGAA AACAACCGCG TCGTGAACTT TGAGGGTTCA CCCGACATGA TTGGTAAATT CGTTGATGTC GAAATTGTTA ACGTTTATGC CAGTTCACTG CGCGGCATTT TACTGCGTAC AGAAGATCAG ATGGACCTGC GAACCCACGA GTCACCGCAA TCGGTGATTG CTCGCACCCG TAAAGAAAAT GAAATTGGTG TAGGTATTTA TCAGCCTTAA
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Protein sequence | MLPNDEAFAT LYYNGDYLPQ RSTARNEVIL MMNNPMTKKL HIKTWGCQMN EYDSSKMADL LASTHGYQLT TIPEEADLLL LNTCSIREKA QEKVFSLLGQ WKLLKEKNPQ LIIGVGGCVA SQEGEQLRQR APCVDVIFGP QTLHRLPEMI NHVQETNSPV VDISFPEIEK FDRLPEPRAE GPTAFVSIME GCNKYCTFCV VPYTRGEEVS RPSDDILFEI AQLAAQGVRE VNLLGQNVNA YRGATYDGDI CSFAELLRLV AAIDGIDRIR FTTSHPIEFT DDIIDVYRDT PELVSFLHLP VQSGSDRILT MMKRAHTALE YKAIIRKLRQ ARPDIQISSD FIVGFPGETQ QDFEQTMKLV ADIHFDTSYS FIYSPRPGTP AADLPDNVSE EEKKQRLHIL QQRISQQAME ISRKMVGTVQ RVLVEGTSRK NVMELAGRTE NNRVVNFEGS PDMIGKFVDV EIVNVYASSL RGILLRTEDQ MDLRTHESPQ SVIARTRKEN EIGVGIYQP
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