Gene YPK_2980 details

Gene Information

• Locus tag: YPK_2980
• Symbol: smpB
• ID: 6089258
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 3279327
• End bp: 3279821
• Gene Length: 495 bp
• Protein Length: 164 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 641598055
• Product: SsrA-binding protein
• Protein accession: YP_001721707
• Protein GI: 170025202
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0691] tmRNA-binding protein
• TIGRFAM ID: [TIGR00086] SsrA-binding protein

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 0.634619
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCGATA CTATGACAAA GAAAAAAGCA TACAAACCCG GTTCCGCAAC CATTGCGCAA 
AATAAACGAG CCCGTCACGA ATACTTCATT GAAGAAGAGT TCGAAGCTGG GCTTGCACTG 
CAAGGTTGGG AAGTAAAATC ACTGCGTGCA GGCAAAGCAA ATATCAGTGA CAGCTACGTA 
ATGTTTAAAA ACGGTGAGGC ATTCCTGTTT GGGGCCACAA TTACGCCGTT GAACGTTGCG 
TCGACTCATG TTGTTTGCGA GCCTATGCGT ACCCGTAAAC TGCTGTTGAA CAAACGCGAA 
CTGGATTCCT TGTTTGGCCG AGTGAACCGA GAAGGCTACA CGGTTGTCGC TCTCTCCATG 
TATTGGAAAA ATGCCTGGGT GAAAGTTAAA ATCGGCGTAG CAAAAGGTAA AAAAGATAAC 
GACAAGCGCG ATGATATTAG AGATCGTGAG TGGAAGTTAG ACAAAGCGCG CATCATGAAG 
CACGCAAATC GTTAA 

 

Protein sequence

MTDTMTKKKA YKPGSATIAQ NKRARHEYFI EEEFEAGLAL QGWEVKSLRA GKANISDSYV 
MFKNGEAFLF GATITPLNVA STHVVCEPMR TRKLLLNKRE LDSLFGRVNR EGYTVVALSM 
YWKNAWVKVK IGVAKGKKDN DKRDDIRDRE WKLDKARIMK HANR