Gene YPK_2970 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_2970 
SymbolsdhA 
ID6088618 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp3269936 
End bp3271702 
Gene Length1767 bp 
Protein Length588 aa 
Translation table11 
GC content51% 
IMG OID641598045 
Productsuccinate dehydrogenase flavoprotein subunit 
Protein accessionYP_001721697 
Protein GI170025192 
COG category[C] Energy production and conversion 
COG ID[COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 
TIGRFAM ID[TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.431118 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATCTGC CAATCAGAGA GTTTGATGCA GTTGTTGTCG GTGCAGGTGG TGCCGGTATG 
CGTGCCGCCC TGCAAATTTC ACAAATGGGC CTGTCTTGCG CCCTGATATC TAAAGTCTTC
CCTACCCGTT CCCATACCGT ATCTGCGCAG GGGGGGATTA CCGTTGCGCT GGGTAATACC
CATGAAGATA ACTGGGAATG GCACATGTAC GATACGGTAA AGGGTTCCGA TTATATCGGC
GATCAGGATG CCATCGAATA TATGTGTAAA ACCGGTCCGG AAGCGGTTCT GGAATTGGAG
CACATGGGTT TACCTTTCTC CCGTTTAGAG GATGGGAGCA TTTATCAGCG TCCATTTGGG
GGGCAGTCAC TGAACTTTGG CGGTGGGCAA GCGGCGCGTA CAGCGGCTGC AGCTGACCGC
ACCGGTCATG CGTTGTTACA CACCCTTTAT CAGCAAAACC TGAAAAACCA CACCACTATT
TTCTCTGAAT GGTATGCACT GGATTTGGTG AAGAATCAGG ACGGCGCTTT TGTCGGTTGT
ACTGCTATTA ATATTGAAAC CGGCGAAGTC GTCTATTTCA AAGCACGGGC CACAATATTG
GCAACTGGCG GTGCTGGGCG TATTTACCAA TCAACAACCA ATGCGCACAT TAATACCGGT
GACGGTGTTG GTATGGCCTT GCGTGCTGGA GTCCCGGTGC AGGACATGGA AATGTGGCAG
TTCCACCCGA CCGGTATTGC CGGTGCGGGT GTATTAGTGA CTGAAGGCTG CCGCGGTGAA
GGGGGGTATT TACTGAATAA ACATGGTGAA CGCTTCATGG AACGTTATGC CCCGAACGCC
AAAGATTTGG CGGGTCGTGA TGTAGTGGCA CGTTCCATTA TGATTGAAAT CCGTGAAGGA
CGTGGTTGTG ACGGTCCTTG GGGCCCACAT GCCAAACTGA AATTGGATCA CTTAGGTAAA
GATGTGCTTG AATCCCGTCT GCCGGGTATT CTTGAGCTGT CGCGCACCTT TGCACACGTT
GACCCGATCA AAGAACCGAT CCCGGTTATC CCTACTTGCC ATTATATGAT GGGGGGAATT
CCGACTAAAG TGACGGGTCA GGCGATTACC GTAAATGAAA AGGGTGAGGA TGTTGTGATC
CCCGGCTTGT TTGCTGTAGG CGAAATTGCC TGTGTTTCCG TCCACGGTGC GAACCGCTTG
GGAGGGAACT CATTACTGGA CTTAGTGGTA TTTGGTCGTG CTGCCGGTAT GCACCTGCAA
GAATCATTGA TGGAGCAGGG CGCAAGCCGC GATGCCAGTG AGTCAGATAT CGAAGCCTCT
CTGGCTCGCA TGAATCGCTG GAATAATACC CGTTCAGGTG AAGATCCAGT TGAAATCCGT
AAAGCATTGC AAGCCTGTAT GCAGAACAAT TTCTCCGTGT TCCGCGAAGG CGATGCGATG
GCAAAAGGGT TGGAAGAGCT GAAAACTATC CGTGAACGTT TGCAAAATGC CCGTTTGGAT
GACACTTCCA GTGAATTCAA TACTCAGCGT ATTGAGTGCC TGGAGCTGGA TAACCTGATG
GAAACTGCGT TTTCAACCGC TGTGTCGGCA AACTTCCGTA CCGAGAGCCG AGGTGCCCAT
AGCCGCTTCG ATTTCCCGGA TCGTGATGAT GTGAACTGGC TGTGCCATTC ACTGTATTTG
CCAGGTACTG AGAGCATGAC CCGCCGTGAG GTAAACATGC AACCTAAGCT ACGCGAGGCA
TTCCCGCCGA AAGTGCGTTC TTATTGA
 
Protein sequence
MNLPIREFDA VVVGAGGAGM RAALQISQMG LSCALISKVF PTRSHTVSAQ GGITVALGNT 
HEDNWEWHMY DTVKGSDYIG DQDAIEYMCK TGPEAVLELE HMGLPFSRLE DGSIYQRPFG
GQSLNFGGGQ AARTAAAADR TGHALLHTLY QQNLKNHTTI FSEWYALDLV KNQDGAFVGC
TAINIETGEV VYFKARATIL ATGGAGRIYQ STTNAHINTG DGVGMALRAG VPVQDMEMWQ
FHPTGIAGAG VLVTEGCRGE GGYLLNKHGE RFMERYAPNA KDLAGRDVVA RSIMIEIREG
RGCDGPWGPH AKLKLDHLGK DVLESRLPGI LELSRTFAHV DPIKEPIPVI PTCHYMMGGI
PTKVTGQAIT VNEKGEDVVI PGLFAVGEIA CVSVHGANRL GGNSLLDLVV FGRAAGMHLQ
ESLMEQGASR DASESDIEAS LARMNRWNNT RSGEDPVEIR KALQACMQNN FSVFREGDAM
AKGLEELKTI RERLQNARLD DTSSEFNTQR IECLELDNLM ETAFSTAVSA NFRTESRGAH
SRFDFPDRDD VNWLCHSLYL PGTESMTRRE VNMQPKLREA FPPKVRSY