| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_2917 |
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| Symbol | |
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| ID | 6087553 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 3215225 |
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| End bp | 3216928 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641597986 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_001721644 |
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| Protein GI | 170025139 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.80885 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAATACG ATTACATCAT CATTGGTGCC GGTTCTGCAG GCAACGTGCT GGCAGCCCGT
TTAACAGAAG ATGCGGATGT CACCGTACTC TTGCTCGAAG CGGGTGGACC AGACTATCGG
CTGGATTTTC GGACACAAAT GCCTGCGGCG CTCGCCTTTC CACTTCAGGG TAAACGTTAT
AATTGGGCTT ATGAAACCGA TCCGGAGCCG CATATGAACA ACCGCCGCAT GGAGTGCGGA
CGCGGTAAAG GTTTGGGCGG TTCATCATTA ATTAATGGCA TGTGTTACAT CCGCGGCAAC
GCCATGGATT TTGACCACTG GGCCAGTTTA TCGGGCCTGG AGGACTGGAG TTATCTTGAT
TGCCTGCCGT ACTTTCGCAA GGCAGAAACA CGCGACATCG GCCCAAATGA TTTCCACGGT
GGTGAAGGCC CTGTCAACGT GACCACACCT AAAATCGGCA ACAACCCGTT ATTTCATGCG
ATGGTCGCTG CGGGTGTGCA GGCCGGTTAT CCGCGTACTG ATGACCTGAA TGGCTATCAG
CAGGAGGGTT TCGGCCCGAT GGATCGTACT GTAACGCCGA AGGGTCGTCG TGCCAGTACT
GCGCGCGGCT ATCTTGATCA GGCGCGCCCA CGCAATAACC TAACCATTAT TACGCACGCC
CTGACGGACC GGATCCTATT TGAAGGGAAA CGAGCCACTG GTGTCCGCTA CCTCAAAGGT
GATGCTGGCA CCGGCCAAAC CGCCTATGCT CGCCGTGAAG TTTTATTGTG TGGGGGTGCT
ATCGCGTCAC CACAAATTTT ACAGCGCTCG GGGATTGGCC CTGCGGAATT ACTGCAACGC
CTGGATATTC CGTTGGTGCA GGCGTTGCCC GGCGTCGGGG AGAATTTGCA AGATCACCTT
GAGATGTATC TGCAATATAG CTGTAAACAG CCGGTGTCAC TTTACCCTGC TCTGCTGTGG
TTTAATCAGC CCAAAATCGG TATCGAATGG TTATTCAACG GTACGGGCGT GGGTGCCAGC
AATCAATTCG AAGCTGGTGG GTTTATCCGC AGTCGCGATG CATTTACCTG GCCGAATATT
CAGTACCACT TCCTGCCCGT CGCCATTAAT TACAATGGGA GCAACGCCGT AAAAGAGCAT
GGTTTTCAGG CGCATGTTGG CTCGATGCGT TCACCAAGCC GTGGCCGCAT TCAGGTAAAA
TCGAAAGATC CGCGCCAGCA TCCAAGTATC TTGTTCAATT ACATGTCGAG CGAACAAGAT
TGGCATGAGT TCCGCGATGC TATCCGCATC ACCCGCGAGA TTATCGCGCA GCCTGCACTG
GATCCATATC GTGGTCGAGA GATAAGCCCT GGGGCCAATG TTCAAAACGA TGACGAACTG
GATGCCTTCA TCCGCGAACA TGCCGAGACG GCATATCATC CTTCGTGCTC ATGTAAAATG
GGTGACGACA AGATGGCGGT GGTTGATGGG CAAGGCCGGG TGCACGGTGT GCAAGGGCTA
CGGGTGGTCG ATGCGTCTAT CATGCCGCAA ATCATTACCG GCAACCTCAA TGCCACGACC
ATCATGATTG CAGAGAAAAT AGCGGATCGT ATTCGTGGCT GCCAACCACT GGCAAAAAGC
AACGCCGCGT ATTTTATCGC CGGAGATACT CCTGCCCGTA CATCTCCCGT AAGGCATTCA
TTACCCGTAA CATCATATCC GTAA
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| Protein sequence | MEYDYIIIGA GSAGNVLAAR LTEDADVTVL LLEAGGPDYR LDFRTQMPAA LAFPLQGKRY
NWAYETDPEP HMNNRRMECG RGKGLGGSSL INGMCYIRGN AMDFDHWASL SGLEDWSYLD
CLPYFRKAET RDIGPNDFHG GEGPVNVTTP KIGNNPLFHA MVAAGVQAGY PRTDDLNGYQ
QEGFGPMDRT VTPKGRRAST ARGYLDQARP RNNLTIITHA LTDRILFEGK RATGVRYLKG
DAGTGQTAYA RREVLLCGGA IASPQILQRS GIGPAELLQR LDIPLVQALP GVGENLQDHL
EMYLQYSCKQ PVSLYPALLW FNQPKIGIEW LFNGTGVGAS NQFEAGGFIR SRDAFTWPNI
QYHFLPVAIN YNGSNAVKEH GFQAHVGSMR SPSRGRIQVK SKDPRQHPSI LFNYMSSEQD
WHEFRDAIRI TREIIAQPAL DPYRGREISP GANVQNDDEL DAFIREHAET AYHPSCSCKM
GDDKMAVVDG QGRVHGVQGL RVVDASIMPQ IITGNLNATT IMIAEKIADR IRGCQPLAKS
NAAYFIAGDT PARTSPVRHS LPVTSYP
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