Gene YPK_2908 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_2908 
Symbol 
ID6089242 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp3203314 
End bp3205128 
Gene Length1815 bp 
Protein Length604 aa 
Translation table11 
GC content43% 
IMG OID641597977 
Productsignal transduction histidine kinase, nitrogen specific, NtrB 
Protein accessionYP_001721635 
Protein GI170025130 
COG category[T] Signal transduction mechanisms 
COG ID[COG3852] Signal transduction histidine kinase, nitrogen specific 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.293686 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAAGGAAT CTAAAGGAAA ATCGAATTTA TTCTCTGTGA TCCCATACGG TTTTTTTGTT 
GGTTTAGTGA TCATTTTGAT CGCCGTGATT ATCACTATGG CGATTAAGGA CCTGAATCGT
GGGCGCAACA TTGAATTTCA GACACTATTA GAAAAAAGCG CCGTATTGAT TCGCTCCTTT
GAATCCAGCT CGCGTACAGG CATGGGAATG AGTTGGCGTC AGCGTCAAAC ATTGATGGAA
GAGATGGCTT ACCAGCCTGG CGTTATCTAT ATTGCGGTTA CCGACCTATC AGGGAAAATC
CTTGCCCACA GTAACCCGGC ACGTGTCGGA ACGCAGCTCT ATAGCCCACA AGAGATGGCG
GATTTAAACG TTCAGTTAGC TGAACAGTGG CGGATAGCGG CTTTTCTTGA TGAGGATAAT
AAAAGTCAGG ATGCTTTTGA GGTCTATCGT TTCTTTAAGC CACTGAGACG CAATAATACC
CATCAGTCCC ATATGAATAT GGTGAGAAGG AGTAACGTTG CTGCGATTCA AGATAATAAT
GACAAATATG AAAATCAAAG TGTCATTTTT ACCGCCTTCG ACACTGAAGC GTTAGATGCG
ATGCAAGCAA AAGATATTCG CAATACGATT ATCTTTTTGT CTATTCTCAG TATGTTGGCT
CTGGCGGGTA TTCTGGCCCT ATTCTGGGCG CGCCGTTACC AGCTTTCCCG ACGCCAGCTA
CAAGACTCTA AAGCGATTTC AACCGAAATT ATCAATAATC TGCCTATTGG GTTGATTACC
ACCAATGAAG AGCAATTGAT CAGTGTCGTA AACCACACGG CAGAAAAGAT ATTCGGTATC
AGTAAAGATA TTCTGACCGG CCAAAATATT CACCAAGCCC TACCTCCAGA ATGGAATCTT
TTAGTTAAAA AAAGTCAACG CCATCAGCCA GTAATAGAGC ATGAATTTGA TTATAAATTA
AAAGAAGGCC TAATTATTCC ATTGAGCATT AGCGTGGCAA ATATTGTTAA TCACAATGGC
AGTTTCCTGG GCAATATATT CATCTTTCGG GACATGAGGG AGGTTCGGCA GTTACAAGAA
GAGATACGGC GCAAAGAAAA ACTGGCGGCC ATTGGCAATT TAGCCGCAGG TGTCGCGCAT
GAAATAAGAA ATCCGCTCTC TTCTATCAAA GGTTTTGCGA AATATTTTGA GGGGCATTCC
CCGCAAGGCA GTGAGGAGCA AGAATTAGCG AAAGTGATGA TAAAAGAGGT CGATAGGCTC
AATAGAGCGG TCACTGAGTT ACTGGGGTTA GTTCGCCCAT CGGATTTAAG GATCCAACTC
GTCAATATTA ACGAAATCAT TGCTCATTCA CTTCATCTTA TTCGTCAGGA TGCCGATAGC
AAAAAAATCA CAATTCAATT TATCAGCAAT GAAAACTTGC CACGAGTGGA AATAGATCCC
GATCGTTTCA CTCAAGCATT ACTCAACCTT TACTTAAATG CTATTCAGGC CATGGGGAGA
GCGGGGACAC TTGAAATTGC CCTGGCGCTT GTCGAAGAGT CAAAATTACG AATTAGCGTA
ATCGATACGG GTAAAGGCAT TAGAGCAGAA GATCTGGAAA ACATCTTTAA TCCTTATTTC
ACGACGAAAG CTTCTGGCAC TGGTTTGGGC CTTGCTATCG TGCAAAAAGT GATTGAAGAG
CATCAAGGTA GAATTACCGT TACCAGCCAC CCGCAATCTG GAACCCGCTT TGACATGACA
ATCCCCTTGG TACAACGCGG CCAATATCGC CCAGATGGGC AAGAACAAAA GGCGTCGAAT
AATGACAACA CATAA
 
Protein sequence
MKESKGKSNL FSVIPYGFFV GLVIILIAVI ITMAIKDLNR GRNIEFQTLL EKSAVLIRSF 
ESSSRTGMGM SWRQRQTLME EMAYQPGVIY IAVTDLSGKI LAHSNPARVG TQLYSPQEMA
DLNVQLAEQW RIAAFLDEDN KSQDAFEVYR FFKPLRRNNT HQSHMNMVRR SNVAAIQDNN
DKYENQSVIF TAFDTEALDA MQAKDIRNTI IFLSILSMLA LAGILALFWA RRYQLSRRQL
QDSKAISTEI INNLPIGLIT TNEEQLISVV NHTAEKIFGI SKDILTGQNI HQALPPEWNL
LVKKSQRHQP VIEHEFDYKL KEGLIIPLSI SVANIVNHNG SFLGNIFIFR DMREVRQLQE
EIRRKEKLAA IGNLAAGVAH EIRNPLSSIK GFAKYFEGHS PQGSEEQELA KVMIKEVDRL
NRAVTELLGL VRPSDLRIQL VNINEIIAHS LHLIRQDADS KKITIQFISN ENLPRVEIDP
DRFTQALLNL YLNAIQAMGR AGTLEIALAL VEESKLRISV IDTGKGIRAE DLENIFNPYF
TTKASGTGLG LAIVQKVIEE HQGRITVTSH PQSGTRFDMT IPLVQRGQYR PDGQEQKASN
NDNT