| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_2836 |
|---|
| Symbol | |
|---|
| ID | 6088371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 3121633 |
|---|
| End bp | 3122799 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641597905 |
|---|
| Product | beta-lactam binding protein AmpH |
|---|
| Protein accession | YP_001721565 |
|---|
| Protein GI | 170025060 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAA GATTGTTGAA ACGTCTCTCT GCCCCGCTGC TGGCTGCTGC TTTGTGGACT
ATTCCGTTGC ACAGCCATGC TGATACTCAG CCGTTGACCT CGCAAGATAC TAAGCTGTTG
ACCTCGCAAA TTGTTGACCA ATACGCCGAA CATATCTTCT ATAACAGTGG AGCTGTAGGA
ATGGCTCTGG TGGTTATCGA TAACAATCAG GTCGTCAACC GTAGCTTTGG TGAAACGCAA
CCCGGCAACA ATATTCGCCC ACGGCCAGAC TCACTGATCC GCATTGCATC AATAACCAAG
CTAATGACCA GCGAAATCAT GGTAAAACTG GCTGATGATG GCATCGTTAA GTTAACTGAC
CCGTTAAAAA AATATGCACC GAAAGGGGTC AACGTCCCCT CTTACAGTGC TAAGCAACCT
ATTAGGCTGT TGCATCTGGC CAGCCATACC AGCGGCCTCC CCCGTGAGCA ACCCGGCGGC
CCGCAAAAAA GACCGGTGTT TACCTGGCCG ACCAAAGATA ATCGCTGGCA ATGGTTGAAA
CTGGCCAAAG TGACCGTTCC ACCAGGCGTG AAAGCCGCTT ACTCTAATTT AGCTTACGAC
TTACTGGCTG ACGCACTGTC ACGAGCTGCG GGGAAACCGT ATGCCCACTT ATTACGTGAT
AAAATCACCG CACCACTGGG GATGAAAAAT ACCACCCTGA CCCCGACGGC GGAGCAATGT
AAACGCCTGA TGATAGGTGT TGGCAGCAGT CGTTGTGGGA ATACAGTTGC AGCAGCAGGT
AGTGGCGGCA TTTACTCGAC CCCCGAAGAT ATGCAGCACT GGATGCAACA ATTCTTAGCT
TCTGATAACA GCGCCCCCAA GCGTTCCGCC AAACGTGAGC AAGCGCTTTA CTTCCAGCGC
GGTGACTTGG TGTCATTGAA AGGTATGGAT GTCGCCGGTC AAGCTGATGC TCTGGGCTTA
GGCTGGGTTT ATATGGCACC TAAAGCTGAC TTACCGGGCA TTATGCAAAA AACCGGCGGT
GGCGGTGGAT TTATTACTTA TATGGCGATG GTCCCAGAAA AAAACATTGG CGTTTTTGTG
GTGGTCACAC GAAGCCAACT GACTAAATTC AGCAATATGA GTGATGGTGT GAATCAATTG
GTTGCTGAGT TGGTGAAAAA TCATTGA
|
|---|
| Protein sequence | MDKRLLKRLS APLLAAALWT IPLHSHADTQ PLTSQDTKLL TSQIVDQYAE HIFYNSGAVG
MALVVIDNNQ VVNRSFGETQ PGNNIRPRPD SLIRIASITK LMTSEIMVKL ADDGIVKLTD
PLKKYAPKGV NVPSYSAKQP IRLLHLASHT SGLPREQPGG PQKRPVFTWP TKDNRWQWLK
LAKVTVPPGV KAAYSNLAYD LLADALSRAA GKPYAHLLRD KITAPLGMKN TTLTPTAEQC
KRLMIGVGSS RCGNTVAAAG SGGIYSTPED MQHWMQQFLA SDNSAPKRSA KREQALYFQR
GDLVSLKGMD VAGQADALGL GWVYMAPKAD LPGIMQKTGG GGGFITYMAM VPEKNIGVFV
VVTRSQLTKF SNMSDGVNQL VAELVKNH
|
|---|
| |