Gene YPK_2826 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_2826 
Symbol 
ID6089042 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp3111584 
End bp3112888 
Gene Length1305 bp 
Protein Length434 aa 
Translation table11 
GC content51% 
IMG OID641597895 
Producttype III effector Hrp-dependent outers 
Protein accessionYP_001721555 
Protein GI170025050 
COG category[S] Function unknown 
COG ID[COG3395] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTATTC AACTTGGCGT GATTGCAGAT GACTTTACCG GGGCGACTGA CATTGCAAGT 
TTTATGTCAG ACAGCGGCTG GAAAGTGGTG CAGTTTATTG GGGTTCCCAC GTCAAATAAT
CTGTGCCCTC CTAATACCGA TGCTGTCGTG ATCGCGTTGA AGAGCCGCTC AATTCCCGCC
GCTGAGGCTA TTGAACAATC ATTGGCCTGC CTACAGTGGC TAAAAGAGTG CGCACAAGCT
CGGCAAATCT ATTTCAAATA TTGTTCCACG TTTGATTCAA CGCCCGCAGG CAATATCGGT
CAGGTCAGCG ATGCCTTGAT GTCTGCCGCG GGGGTGCAAC AGTTAGTTCA CTGTCCTGCA
TTGCCGCAGA ATAAGCGCAC TGTGGTTCAT GCCCATCTTT TCGTCAATGG CGTGTTGCTG
AATCAATCAG GGATGGAAAA TCACCCGCTC AACCCGATGC GTGATGCTGA TCTACGGCGG
GTACTGGCGC CACAAATTCA TGGCGCGGTG GGTTCATTGA ATCTCGACGC TATTCAACAG
GGTACATTGG CTATTCATCA GCGTCTGGTT GCGCTATCAG CACAGGGCTG CAACCACGTG
ATTGCTGATA CGCTCACCCC AGCTGATTTG GATCAACTGG CACTGGCGTT AGCCCAGCAA
CCATTACTTG CGGGCGGTTC GGGTTTAGGG GGGGCGTTGG CGAAACGGTT TCCTTCTATT
TTTATTTCAG GTGCGGCTTC TACGTTAGAT GCGGCTTCTA CGTCAGGGGC GACGAAATTT
GCGTTTCCGA TTAAGCGGAA AACCGTGGTG CTGTCAGGCA GTTGTTCAGC CATGACTCAG
CGGCAAGTTA GCACTTACTG TCAACAGGCG GCACATTTTG CGCTGGATGT TGGGCGTTGT
CTTGAGGTGA ATTCAGGTTA TATCAATGAT ATTGCTGATT GGGTGATGGC ACATAGCTGC
GAGGCGCTGG CGCCATTAGT GTACGCCACT CAGCCGTCGG ATATCATTCG TGAAATCCAA
CAACAATACG GGGAGCAGCA AGCCAGTCTG GCCGTGGAAG CCGCGTTTGC TGGTTTGGCT
AACGAATTAT TAGCCCGTGG TGTCAATACG TTCATCGTGG CAGGTGGTGA AACATCCGGT
ACGGTGGTGA AACAACTTGG CGTTAATATG TTGGAAATTG GCCAATCAAT CGCACCTGGG
GTTCCGTGGG TACGTGACCC TCAGCGTGGT CTGATGCTGG CACTCAAGTC CGGTAATTTT
GGTAATGAAC ACTTTTTTGT GGCAGCACAG GAGTATGCAG AGTGA
 
Protein sequence
MSIQLGVIAD DFTGATDIAS FMSDSGWKVV QFIGVPTSNN LCPPNTDAVV IALKSRSIPA 
AEAIEQSLAC LQWLKECAQA RQIYFKYCST FDSTPAGNIG QVSDALMSAA GVQQLVHCPA
LPQNKRTVVH AHLFVNGVLL NQSGMENHPL NPMRDADLRR VLAPQIHGAV GSLNLDAIQQ
GTLAIHQRLV ALSAQGCNHV IADTLTPADL DQLALALAQQ PLLAGGSGLG GALAKRFPSI
FISGAASTLD AASTSGATKF AFPIKRKTVV LSGSCSAMTQ RQVSTYCQQA AHFALDVGRC
LEVNSGYIND IADWVMAHSC EALAPLVYAT QPSDIIREIQ QQYGEQQASL AVEAAFAGLA
NELLARGVNT FIVAGGETSG TVVKQLGVNM LEIGQSIAPG VPWVRDPQRG LMLALKSGNF
GNEHFFVAAQ EYAE