Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_2826 |
Symbol | |
ID | 6089042 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | - |
Start bp | 3111584 |
End bp | 3112888 |
Gene Length | 1305 bp |
Protein Length | 434 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641597895 |
Product | type III effector Hrp-dependent outers |
Protein accession | YP_001721555 |
Protein GI | 170025050 |
COG category | [S] Function unknown |
COG ID | [COG3395] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTATTC AACTTGGCGT GATTGCAGAT GACTTTACCG GGGCGACTGA CATTGCAAGT TTTATGTCAG ACAGCGGCTG GAAAGTGGTG CAGTTTATTG GGGTTCCCAC GTCAAATAAT CTGTGCCCTC CTAATACCGA TGCTGTCGTG ATCGCGTTGA AGAGCCGCTC AATTCCCGCC GCTGAGGCTA TTGAACAATC ATTGGCCTGC CTACAGTGGC TAAAAGAGTG CGCACAAGCT CGGCAAATCT ATTTCAAATA TTGTTCCACG TTTGATTCAA CGCCCGCAGG CAATATCGGT CAGGTCAGCG ATGCCTTGAT GTCTGCCGCG GGGGTGCAAC AGTTAGTTCA CTGTCCTGCA TTGCCGCAGA ATAAGCGCAC TGTGGTTCAT GCCCATCTTT TCGTCAATGG CGTGTTGCTG AATCAATCAG GGATGGAAAA TCACCCGCTC AACCCGATGC GTGATGCTGA TCTACGGCGG GTACTGGCGC CACAAATTCA TGGCGCGGTG GGTTCATTGA ATCTCGACGC TATTCAACAG GGTACATTGG CTATTCATCA GCGTCTGGTT GCGCTATCAG CACAGGGCTG CAACCACGTG ATTGCTGATA CGCTCACCCC AGCTGATTTG GATCAACTGG CACTGGCGTT AGCCCAGCAA CCATTACTTG CGGGCGGTTC GGGTTTAGGG GGGGCGTTGG CGAAACGGTT TCCTTCTATT TTTATTTCAG GTGCGGCTTC TACGTTAGAT GCGGCTTCTA CGTCAGGGGC GACGAAATTT GCGTTTCCGA TTAAGCGGAA AACCGTGGTG CTGTCAGGCA GTTGTTCAGC CATGACTCAG CGGCAAGTTA GCACTTACTG TCAACAGGCG GCACATTTTG CGCTGGATGT TGGGCGTTGT CTTGAGGTGA ATTCAGGTTA TATCAATGAT ATTGCTGATT GGGTGATGGC ACATAGCTGC GAGGCGCTGG CGCCATTAGT GTACGCCACT CAGCCGTCGG ATATCATTCG TGAAATCCAA CAACAATACG GGGAGCAGCA AGCCAGTCTG GCCGTGGAAG CCGCGTTTGC TGGTTTGGCT AACGAATTAT TAGCCCGTGG TGTCAATACG TTCATCGTGG CAGGTGGTGA AACATCCGGT ACGGTGGTGA AACAACTTGG CGTTAATATG TTGGAAATTG GCCAATCAAT CGCACCTGGG GTTCCGTGGG TACGTGACCC TCAGCGTGGT CTGATGCTGG CACTCAAGTC CGGTAATTTT GGTAATGAAC ACTTTTTTGT GGCAGCACAG GAGTATGCAG AGTGA
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Protein sequence | MSIQLGVIAD DFTGATDIAS FMSDSGWKVV QFIGVPTSNN LCPPNTDAVV IALKSRSIPA AEAIEQSLAC LQWLKECAQA RQIYFKYCST FDSTPAGNIG QVSDALMSAA GVQQLVHCPA LPQNKRTVVH AHLFVNGVLL NQSGMENHPL NPMRDADLRR VLAPQIHGAV GSLNLDAIQQ GTLAIHQRLV ALSAQGCNHV IADTLTPADL DQLALALAQQ PLLAGGSGLG GALAKRFPSI FISGAASTLD AASTSGATKF AFPIKRKTVV LSGSCSAMTQ RQVSTYCQQA AHFALDVGRC LEVNSGYIND IADWVMAHSC EALAPLVYAT QPSDIIREIQ QQYGEQQASL AVEAAFAGLA NELLARGVNT FIVAGGETSG TVVKQLGVNM LEIGQSIAPG VPWVRDPQRG LMLALKSGNF GNEHFFVAAQ EYAE
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