Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_2786 |
Symbol | |
ID | 6088113 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 3075248 |
End bp | 3077056 |
Gene Length | 1809 bp |
Protein Length | 602 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641597855 |
Product | extracellular solute-binding protein |
Protein accession | YP_001721516 |
Protein GI | 170025011 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.426757 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTTTAC GCTTATTTGC TACCTTGATA CTTTCGGCCA TGAGTTTTGG GTTAGCTGCC GAAACCATTA AAGAGGGCGT TTCTTTTGCC ATATTGGGCG ACCCCAAGTA CTCATCGGAT TTTAGCCATT TTGATTATGT CAATCCAGCG GCCCCTAAAG GGGGAAATAT TACTCTGTCG GCGATTGGCA CATTTGATAA TTTCAACCGG TATGCATTGC GTGGTACCTC TGCAGCTCGA ACGGAGAGAC TCTATGATTC ATTGTTCAGT CCCTCAAGCG ATGAGATTGG CAGCTACTAT CCATTAATTG CGGAATCAGC GCGCTATTCT CCCGACTTCA GTTGGATTGA GGTTGATATC AACCCCCACG CCCGTTTTCA TGATGGTGCC CCGATTACTG CCGAGGATGT GGCCTTCACC TTCAACAAAT TTATGACTGA AGGGGTACCA CAATTTCGAT TGTTCTATAA AGGCGTTAAA GTCAACGCTA TTTCCCGTCT GACGGTACGT TTTGAATTTC CTGAACCTAA CAAAGATAAA ATGCTCGGCC TACTTGGTTT CCCGGTGATG CCCAAACATT TCTGGAAAGA TCATAAGCTG AGTGACCCAC TCAGTACCCC TCCAGTCGCC AGCGGCCCTT ACCGCATCAG CAAATACAAA ATGGGCCAAT ATGTCACTTA TGAACGGGTA AAAGATTACT GGGCCGCCAA TCTGCCGGTT AACCGGGGCC AATATAATTT TGACACTATC CGTTATGATT ATTATCTGGA CGACAAAGTC GCCTTAGAAG CCTTTAAAGC CGGAGCCTTT GATTTACGGA CGGAGTCCTC ACCGAAAAGC TGGGCGACGC AGTATGCGGG CGGTAACTTC GCCAAGAACT ATATCGTCAA ACAGGATATT ACCGACAACT CGGCACAGAA CACTCGCTGG TTAGCATTTA ATGTGCAACG GCCCCTCTTC AGTGACCGAC GCGTCCGCCA GGCGCTGACT TTGGCCTTCG ATTTTGAATG GATGAACAAA GCCTTTTATT TCAATAGCTA TCAGCGTGCC AATAGCTTCT TCCAAAATAC CGAATATGCG GCAACAGGTT ATCCGGACAG TGCAGAACTG GCTTGGCTCG CGCCATTGAA AGATAAAATA CCCGCGGAAG TTTTCACCCA GATTTATCAA CCACCACACA CGGATGGTAG CGGCTATTCG CGAGATAACC TGCTCAAAGC CAAAGAGTTA CTGAGTGAAG CGGGCTGGGA AGTCAAAGAC CAACAACTGG TGAATAGTAA AACCGGTAAA CCTTTTGAAT TTGAATTGCT ATTACCCAGC GGCAGCGATT TTCAGTATGT GCAACCGTTC AAACACAATT TGCAGCGTTT AGGTATCACG ATGAAGATCC GCGAAGTTGA CAGCTCGCAG TTTATTAATC GCTTACGCAG CCGGGATTTC GATATGATCC CAACGGTTTA CAACGCCTTC CCTTACCCAA GCCCAGACCT GCAAATCTTG TGGAGTTCAG CCTACATTGA TTCCACCTAT AACAGACCCG GTATTAAAGA TCCGGCCATC GACCAATTAA TCGCCCAGAT TGTCAGCCAT CAGGATCAAC CAGAGGCCTT ACTCTCTCTG GGGCGTGCCC TTGACCGGGT ATTGACCTGG AATTATTTGA TGATCCCGAT GTGGTATTCC AATCATAGCC GCTTCGCCTA TTGGGATAAA CTCTCGATGC CAGCGGTTCG TCCCACCTAT TCGCTAGGGT TTGATAGCTG GTGGTTTGAT GTTAACAAGG CAGCTCGCCT GCCAATAGAA CGTCGTTAG
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Protein sequence | MFLRLFATLI LSAMSFGLAA ETIKEGVSFA ILGDPKYSSD FSHFDYVNPA APKGGNITLS AIGTFDNFNR YALRGTSAAR TERLYDSLFS PSSDEIGSYY PLIAESARYS PDFSWIEVDI NPHARFHDGA PITAEDVAFT FNKFMTEGVP QFRLFYKGVK VNAISRLTVR FEFPEPNKDK MLGLLGFPVM PKHFWKDHKL SDPLSTPPVA SGPYRISKYK MGQYVTYERV KDYWAANLPV NRGQYNFDTI RYDYYLDDKV ALEAFKAGAF DLRTESSPKS WATQYAGGNF AKNYIVKQDI TDNSAQNTRW LAFNVQRPLF SDRRVRQALT LAFDFEWMNK AFYFNSYQRA NSFFQNTEYA ATGYPDSAEL AWLAPLKDKI PAEVFTQIYQ PPHTDGSGYS RDNLLKAKEL LSEAGWEVKD QQLVNSKTGK PFEFELLLPS GSDFQYVQPF KHNLQRLGIT MKIREVDSSQ FINRLRSRDF DMIPTVYNAF PYPSPDLQIL WSSAYIDSTY NRPGIKDPAI DQLIAQIVSH QDQPEALLSL GRALDRVLTW NYLMIPMWYS NHSRFAYWDK LSMPAVRPTY SLGFDSWWFD VNKAARLPIE RR
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