| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_2695 |
|---|
| Symbol | |
|---|
| ID | 6088774 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 2975598 |
|---|
| End bp | 2977547 |
|---|
| Gene Length | 1950 bp |
|---|
| Protein Length | 649 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641597764 |
|---|
| Product | macrolide transporter ATP-binding /permease protein |
|---|
| Protein accession | YP_001721425 |
|---|
| Protein GI | 170024920 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGCAT TGCTTGAATT AGAAGGCATC CGCCGTAGTT ATCAGTCTGG CGAAGAAATT
GTCGATGTGT TGCAGGATGT CTCATTGACC ATCAATGCGG GTGAACTGGT CGCGATTATT
GGCGCTTCTG GCTCGGGTAA GTCGACATTG ATGAATATCT TGGGATGTTT GGATAAACCC
AGTGCCGGTA TTTATCGTGT CGCTGGGCAG AATGTTGATG AGTTGGATGA CGATGCGTTG
GCGGCACTGC GCCGTGAACA TTTTGGTTTT ATTTTCCAGC GTTATCACCT GCTTCCGCAT
CTCAGTGCCG CGCATAATGT GGAAGTCCCG GCGGTTTATG CAGGGTTGGG TAAACATGAG
CGCCGTGAGC GAGCAAACAT GTTGTTGACC CGGCTGGGGC TGGGGGATCG TGTGAGCTAT
CAGCCTAACC AGCTTTCAGG TGGGCAACAA CAACGGGTCA GTATTGCCAG GGCGCTGATG
AATGGCGGGC AAGTTATCCT CGCCGATGAG CCTACTGGTG CGTTGGATAG CCATTCTAGT
GTCGAGGTGA TGGCTATCCT GAAACAACTG CAACAACAGG GGCATACGGT CATTATTGTG
ACTCATGACC CCACTGTTGC CGCGCAGGCT GAGCGAGTTA TTGAGATCAA AGATGGCCGT
ATTATGGCCG ATTCAGGATC AAAAAATGAG CCAGTCGTCG CGGCGGCAGA ACTGATGAGT
TTAACGCCAG CGGCACCTTC ATGGCAGCAA TTGGTTGGCC GTTTCCGTGA GGCTCTGTTA
ATGGCCTGGC GCGCCATGTC GGCGAATAAA ATGCGTACCG CGCTGACGAT GCTAGGTATC
ATTATTGGTA TTGCGTCGGT GGTATCGATA CTGGTTGTCG GTGATGCCGC GAAGCAGCTT
GTCTTGGCGG ATATTCGCGC TATCGGTACG AACACCATTG ATATCTATCC CGGTAAAGAT
TTTGGTGATG ATGACCCCAG TACCCGCCAA GCGTTGGTAC ATGACGATAT GGCGGCATTG
AAAGCGCAAT CTTACGTCAG TGCGGTATCT CCCTCTATCG GCGGCAGTAT GCGGCTGCGT
TTTGGCAATA TTGATGTGGC AGCCAGTGTC TTGGGAGTCA GTGACGAGTA CTTTCGGGTC
TTCGGTATGG CGATGGAACA AGGGGCACCT ATCACCCGCG AGCAGGTTGA GCGGCAGGCC
CAGACAGTCG TTATTGACCT CAATACCCAA CGCCGCCTGT TCCCTCATAT GAAGGATGTG
GTTGGGCAAG TGATATTGGT GGGCAATATG CCTGCGACTG TGGTTGGCGT GGTAGCAGAA
AAAAAATCGA TGTTTGGCAG CAATAAAGCA CTGCGGGTGT GGGTGCCCTA CAGTACGATG
GCCAACCGCT TGATGGGGCG CTCTTATTTT GATTCCATCA CGATCCGGAT TAAAGAGGGG
TACAGCAGTA AAGAGGCTGA ACAGCAGTTG GTCAGGTTGT TAACCTTGCG TCACGGTAAA
AAAGACATAT TTACTTATAA TATGGATAGC CTGTTGCAGA CGGCTGAAAA AACAACGCAG
ACTATGCAAT TGTTTCTGAC ATTGGTGGCG GTTATTTCAC TGGTGGTTGG CGGAATAGGC
GTGATGAATA TTATGCTGGT TTCCGTAACC GAGCGGACGC GTGAGATCGG TATCCGTATG
GCGGTGGGCG CGCGTTCCAG CGACGTTATG CAACAATTTT TGATTGAGGC GGTTCTGGTG
TGCCTGATAG GCGGGGCGCT CGGAATATCA TTATCCTTTG CCATCGGGCT GATTGTGGAA
ATGTTCTTGC CTAACTGGCG TATTGCTTTC CCCCCTATGG CATTGTTCAG TGCATTTTTA
TGTTCGACGG TAATTGGCGT GGTGTTTGGC TATTTACCTG CCCGCAGTGC CGCACGGCTT
AACCCGATTG ACGCGTTAGC TCGTGAATAG
|
|---|
| Protein sequence | MAALLELEGI RRSYQSGEEI VDVLQDVSLT INAGELVAII GASGSGKSTL MNILGCLDKP
SAGIYRVAGQ NVDELDDDAL AALRREHFGF IFQRYHLLPH LSAAHNVEVP AVYAGLGKHE
RRERANMLLT RLGLGDRVSY QPNQLSGGQQ QRVSIARALM NGGQVILADE PTGALDSHSS
VEVMAILKQL QQQGHTVIIV THDPTVAAQA ERVIEIKDGR IMADSGSKNE PVVAAAELMS
LTPAAPSWQQ LVGRFREALL MAWRAMSANK MRTALTMLGI IIGIASVVSI LVVGDAAKQL
VLADIRAIGT NTIDIYPGKD FGDDDPSTRQ ALVHDDMAAL KAQSYVSAVS PSIGGSMRLR
FGNIDVAASV LGVSDEYFRV FGMAMEQGAP ITREQVERQA QTVVIDLNTQ RRLFPHMKDV
VGQVILVGNM PATVVGVVAE KKSMFGSNKA LRVWVPYSTM ANRLMGRSYF DSITIRIKEG
YSSKEAEQQL VRLLTLRHGK KDIFTYNMDS LLQTAEKTTQ TMQLFLTLVA VISLVVGGIG
VMNIMLVSVT ERTREIGIRM AVGARSSDVM QQFLIEAVLV CLIGGALGIS LSFAIGLIVE
MFLPNWRIAF PPMALFSAFL CSTVIGVVFG YLPARSAARL NPIDALARE
|
|---|
| |