Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_2649 |
Symbol | |
ID | 6089080 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 2911078 |
End bp | 2912160 |
Gene Length | 1083 bp |
Protein Length | 360 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641597718 |
Product | porin |
Protein accession | YP_001721379 |
Protein GI | 170024874 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000000040387 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGATGAAGC GCAATATTCT TGCAGTAGTA ATCCCAGCTC TGTTAGCCGC TGGTGCAGCT AATGCAGCAG AAATCTATAA CAAAGATGGC AACAAACTTG ACCTGTACGG TAAAGTTGAC GCACGTCACT CTTTCTCCGA TAACAACAAA CAAGATGGCG ACAAGTCTTA CGTTCGTTTC GGCTTCAAAG GTGAAACCCA AATTACTGAC CAACTGACCG GTTACGGCCA GTGGGAATAC AACATTCAAG CAAACAACGC TGAAGAATCA GGCGCTCAAG AAGGCAACGC AACCCGTCTG GGCTTTGCTG GTCTGAAATT TGCTGAATTC GGTTCATTCG ACTACGGCCG TAACTACGGC GTAATCTATG ACGTTAACGC ATGGACTGAC ATGCTGCCAG TGTTCGGTGG TGATTCAATC TCCAACTCTG ACAACTTCAT GACTGGCCGT TCTACTGGCC TGGCAACTTA TCGTAACAAC AATTTCTTCG GTCTGGTTGA CGGCCTGAAC TTTGCCCTGC AATACCAAGG CAAAAATGAC CGTTCTGAAG TCAAAGAAGC TAACGGTGAC GGCTTCGGTA TCGGTTCTAC TTATGATATC GGCAATGGCA TTAACTTCGG TGCTGGTTTC TCTTCTTCAA ACCGTACTCT TGATCAAAAA TATGGTTCTA CCGCTGAAGG CGACAAAGCT CAGGCATGGA ACGTTGGCGC TAAATACGAC GCAAACAACG TATACCTGGC TGTAATGTAT GCTGAAACTC AGAACCTGAC TCCATACGGT AGCTTCTCTG ATACTATCGC TAACAAGACT CGCGATATCG AGATCACTGC ACAATATCAG TTCGACTTCG GTCTGCGCCC ATCACTGGGT TATGTTCAGT CCAAAGGTAA GGACCTGAAC GATGTTGATG CCAACCATGA TCTGCTGAAA TATGTTTCTG TTGGTACTTA CTACTACTTC AACAAAAACA TGTCTACCTA TGTTGATTAC AAAATCAACT TGCTGGACGA AGATGAGTTC ACAATCGCAA ACGGTCTGAA CACCGACAAC GTTGTTGCTG TTGGCTTGGT TTACCAGTTC TAA
|
Protein sequence | MMKRNILAVV IPALLAAGAA NAAEIYNKDG NKLDLYGKVD ARHSFSDNNK QDGDKSYVRF GFKGETQITD QLTGYGQWEY NIQANNAEES GAQEGNATRL GFAGLKFAEF GSFDYGRNYG VIYDVNAWTD MLPVFGGDSI SNSDNFMTGR STGLATYRNN NFFGLVDGLN FALQYQGKND RSEVKEANGD GFGIGSTYDI GNGINFGAGF SSSNRTLDQK YGSTAEGDKA QAWNVGAKYD ANNVYLAVMY AETQNLTPYG SFSDTIANKT RDIEITAQYQ FDFGLRPSLG YVQSKGKDLN DVDANHDLLK YVSVGTYYYF NKNMSTYVDY KINLLDEDEF TIANGLNTDN VVAVGLVYQF
|
| |