Gene YPK_2504 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_2504 
Symbol 
ID6088157 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp2738369 
End bp2739793 
Gene Length1425 bp 
Protein Length474 aa 
Translation table11 
GC content51% 
IMG OID641597572 
Producthypothetical protein 
Protein accessionYP_001721234 
Protein GI170024729 
COG category[V] Defense mechanisms 
COG ID[COG0534] Na+-driven multidrug efflux pump 
TIGRFAM ID[TIGR00797] putative efflux protein, MATE family 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0192343 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACAGGG TTTCAGAGGC CGTTAAGTTG AAAATCTTCC GCGAAAGCGT GTGGTATAAG 
AAGCGAAAAT CATCTCGGGT ACTCTTTTGG CGTGAGATCA CACCGCTGGC CTTTCCGTTG
TTTATTGAAG GTTTGTGCGT ACTGCTGATG GGGGTATTTA GTACTCTGCT GGTGAGTTGG
TTGGGTAAAG AAGCGATGGC AGCGGTGGGG CTAGCCGACA GTTTCAATAT GCTGATTGCG
GCTTTTTTTG CCTCCGTGGC ATTAGGGACC TCGGTCGTTG TGGCCTTCAG TCTGGGCCAA
CGCAAACGCC AGCAGGCGCA AACTGCCGCC CGACAATCCA TGACATTGCT GGTATTAATC
TCCCTGTTAT TAGTTGTCTT GGTTCATTTT TCAGGCCAGA CCATTATTGA TTTAATGGCT
AACCAGGCAG ACCCCTCGGT TAAAGCAATG GCCCTGACCT ATCTGCATTT CACTGTCTGG
AATTACCCTG CGATGGCGAT AACCTTGGTG GGGTGCGGTG CGTTACGTGG TGCGGGCAAT
ACGCGTTTGC CGATGCTTAT TAACATTGGC ATGAACATTC TTAACATTGT CATTAGCAGT
ATATTAATTT ATGGCCTCTT TAATTGGCAA GGACTGGGTT TTATCGGTGC CGGTATTGGC
ATCACATTGG CCCGCTCTGC AGGCGCACTG GTGGTGGTCG TGCTGCTGAT TTACGGCGCG
AATAATACGT TGCGGATCCC CTTCAAAGCC TATTTCATGC CTTTTACCTC GGCCATTATG
TTTGAGGTGC TGAGCATTGG TATTCCGGCG AGTGTTGAGT CAGTTATGTT CAATATTGGC
AAGTTAATCA CTCAACGGTT TGTTGCCGGC ATGGGGACCG ACGTGATCGC GGGTAACTTT
ATTGCCTTTT CAATTGTGGC GATAATCAAT CTGCCCGGTA ATGCGCTGGG GTACACCTCA
ACCATTATTA TTGGTACCCG GCTGGGCAAG GGGCAAATTT TGCAACCTAT TCGGCAGATA
AAACATATCT TTTGGCTATC GACGCTTGGG GTCTGCTTTA TTGCATTGCT GTCCATTCCC
AGTGCGGGTT TTCTGGCCTC GCTGTATACC GATGATCCGG CAGTTATCAC GGTGGTGAAG
CATTTGATCT GGATGAATGC GTTATTTATG CCGATTTGGG CGGCGTCTTG GGTCTTACCT
GCCGGCTTGA AAGGCGCTAA GGATGCCAGT TACACCATGT GGGTTGCCCT GGCCGGGATG
TGGGGCTGTC GCATTATTGC TGGCTACATT CTGGGGGTAA CGCTAGGGTT TGGCGTGACA
GGGGTATGGA TGGGGATGTT CCTGGATTGG ATGGTCCGGG GGGTGTTGTT TTATCGCCGC
ATGTCCACGG GCCGTTGGTT ATGGCGCTAC CGGCCCAGCG TCTGA
 
Protein sequence
MNRVSEAVKL KIFRESVWYK KRKSSRVLFW REITPLAFPL FIEGLCVLLM GVFSTLLVSW 
LGKEAMAAVG LADSFNMLIA AFFASVALGT SVVVAFSLGQ RKRQQAQTAA RQSMTLLVLI
SLLLVVLVHF SGQTIIDLMA NQADPSVKAM ALTYLHFTVW NYPAMAITLV GCGALRGAGN
TRLPMLINIG MNILNIVISS ILIYGLFNWQ GLGFIGAGIG ITLARSAGAL VVVVLLIYGA
NNTLRIPFKA YFMPFTSAIM FEVLSIGIPA SVESVMFNIG KLITQRFVAG MGTDVIAGNF
IAFSIVAIIN LPGNALGYTS TIIIGTRLGK GQILQPIRQI KHIFWLSTLG VCFIALLSIP
SAGFLASLYT DDPAVITVVK HLIWMNALFM PIWAASWVLP AGLKGAKDAS YTMWVALAGM
WGCRIIAGYI LGVTLGFGVT GVWMGMFLDW MVRGVLFYRR MSTGRWLWRY RPSV