| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_2496 |
|---|
| Symbol | |
|---|
| ID | 6088938 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 2729478 |
|---|
| End bp | 2730470 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641597563 |
|---|
| Product | TRAP dicarboxylate transporter, DctP subunit |
|---|
| Protein accession | YP_001721226 |
|---|
| Protein GI | 170024721 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGATTGC CAACGTCTTT CCCTACATTA TGTTTAACCG CCTCGGCGTT GTTACTGAGC
CAAGTGCTAT TTAGCCAATC CGCAACTGCC CAACAAATTA AAGCAGCCGA TGTTCATCCT
AAAGATTATC CCAATGTCGT GGCGATGAAA GATATGGGCG AAAAACTAAA AGTCGCGACT
GATGGCCGTC TGGAGATGAA AACATTTCCT GGTGGAGTGT TAGGTGATGA GAAGCAAATG
ATAGAACAGG CGCAAATGGG CGCAATCGAT ATTATTCGTG TTTCTATGAC ACCCGTTGCC
TCTATTTTAC CGGAGATTAA TGTCTTTACC CTTCCCTATA TCTTCCGTGA CGAAGATCAT
TTACATAAGG TCCTTGATGG TAAAATTGGT CAGGAAATAG GCGGTAAAAT CACCGATAAC
AAAAATTCAA AATTGGTGTT CTTAGGTTGG ATGGATGGCG GTACCCGTCA CCTGATTACT
AAACAACCGG TGATTAAACC GGAAGATCTC AGCGGGATGA AAATCCGTGT TCAAGGCAGC
CCGATTGCGT TAGCAACGCT AAAATCAATG GGGGCCAATG CCCTGAGTAT GGGCGTCAGT
GAAGTGTTCA GCGGTATGCA AACCGGGGTC ATTGATGGCA CCGAAAATAA CCAGCCTACA
TTTGTAGCCC ATAATTACCT GCCTGTTGTC AAAAATTATA CCCTGAGCGG CCATTTCATT
ATTCCCGAAG TATTCCTGTA TTCGAAAGCC AAGTGGGACA AATTATCTGC CGAAGATCAG
CAAACCATTC TTAAATTAGC AAAAGAAGCA CAAGCTGAGC AACGCGTATT ATGGACAGCC
TATGAGCAAC AAGCTCATGA GAAAATGAAG GCCGGCGGTG TGCAGTATCA TGAGATTGAT
CGTGATTATT ATTATAAAGC CACTCAGCCC GTACGCGATG AGTTCGGCAA AGGTCATGAG
GACTTGATTA AACAGATTGG TGACGTCCAA TAA
|
|---|
| Protein sequence | MRLPTSFPTL CLTASALLLS QVLFSQSATA QQIKAADVHP KDYPNVVAMK DMGEKLKVAT
DGRLEMKTFP GGVLGDEKQM IEQAQMGAID IIRVSMTPVA SILPEINVFT LPYIFRDEDH
LHKVLDGKIG QEIGGKITDN KNSKLVFLGW MDGGTRHLIT KQPVIKPEDL SGMKIRVQGS
PIALATLKSM GANALSMGVS EVFSGMQTGV IDGTENNQPT FVAHNYLPVV KNYTLSGHFI
IPEVFLYSKA KWDKLSAEDQ QTILKLAKEA QAEQRVLWTA YEQQAHEKMK AGGVQYHEID
RDYYYKATQP VRDEFGKGHE DLIKQIGDVQ
|
|---|
| |