| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_2470 |
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| Symbol | |
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| ID | 6088820 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 2705155 |
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| End bp | 2707236 |
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| Gene Length | 2082 bp |
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| Protein Length | 693 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641597536 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_001721200 |
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| Protein GI | 170024695 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000343207 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTTGT ACCCGGCATC ATTTGACGAT CATGTTTTCC GGTTATTAAT TGAGGCCGTT
GATGATTACG CCATATACAT CATTGATGCC AAGGGGCACG TTCTGACCTG GAACAATGGC
GCAGAACGCA ATACCGGTTA TTGTGCCGAA GAGGTTATCG GTCAATCCTT CGAGCTGTTT
TATACCCCGG AAGATTTAGT GAACGGCTTG TCAGTCAAAG GGCTTAAGCA CGCTAATCAG
TTTGGTCATT ACGAATCTCA AAGCTGGCGT GTGCGCAAAA ATGGCAAACG TTTTTGGGGC
AACGTCACTC TCAGTGCACT TCATAACTCA GAAAATATTT TGCAGGGCTT TGTTCATGTT
ACCCGTGACC TGACCGACCA ATGGCAGCGG GATAATGCAC TGCGGAAAAG TGAAGAGCTG
TTTCGTCATC TGATCAGTGA AGTGGAAGAT TGTGCCATCT ACATGATCGA CACTGCGGGT
CGCATCCTTA CCTGGAATAA AGGGGGGGAA CGGCATGAAG GTTATACCCG TGAGGAGATA
ATCGGTGAGC ACTTTACTCT ATTATTTACG CAGGAGGACA TTTCGGCGGG TGTACCGGAA
AAATCACTCG CCAAGGCGGT AGCAGAAGGT AATTTCCAGA CTGAAGGGTG GCATGTCCGT
AAGAATAATA TCCGTTATTG GGCCAGTGTC GCCATTAGCC CAATACACGA TGACCAAGGA
AACTTATTGG GTTTCACCAA GATTGTCCGC GACTTGACTG AACGCCACCA ACGTGAAGAA
ACATTGCGTA TCAGCGAAGA ACGCTTTCGC CTGATGGTTG ATTCTGTTGA AGATTATGCC
ATTTTAATGC TAGACCCTTG GGGTCGGGTT AATACCTGGA ATCACGGTGC ACAACACAAG
ATTGGCTATG CCAGTAACGA GATTATCGGC CAGCATTTCG GCTGCCTCTT CTTGCCGGAA
GACCTTGTTG CAGGGCTACC AGGAAAACTG CTGAAAACAG CGGCGTCAGC GAGCCGTATA
GAGTACGAAG GTTGGTTGGT TCGTAAAGAT ATTACCCGCT ATTGGGCGCT TACCGTGATT
ACAGCGATAC ATGACCATAA CGGTAAACTG TTGGGTTATA CCAAACTCAT CCGTGATATT
AGTGAGCGAA AACAACGCGA AGATGCCCTG CGCGCCAGTG AAGCTGCCCG CTATGAAGAG
CGCGAACAGT TACATCAAGT TCTGTCATCC ATTCCTGATG GGATTATCTC TCTCAATAGT
GAAGGCCGGG TGGTATTAAT GAACCCGAAA GCTGAAGAGA TGACGGGCTG TAGGCAGAAT
GAATCCTGTG GTTTACCGAT TGAAGAGGTC TTTATTTTGT GGTCTCCACT ACAGGATAAA
AATCAATTAG AGGCCTTCAG TCAATGCCTG GCTGAAGGAC GACAGACCCT ATTACCAGAA
GGCCATTATC TGGTATCTCG CTGGGGAGAA CGCCAAGAAA TACGCTGTTC AGCTTCACCA
ATACGTGATC GTGACAATAT TGTTACTGGC GCCGTCGTGG TATTCCAAGA TGTCACCCGT
GCACGCCATG AACAGCGGGC GCTGCAATAC CAGGCTAGCC ATGACATGCT CACCGGGTTA
ATTAACCGCC GACGATTGGA AGAGCGATTG ACACTAGCGA TTAATCAATT AGCTCATGAC
GGGCAACATA TACTTTGCTA TGTCGATTTA GACTATTTCA AAGATGTGAA TGATAATGCG
GGTCACGAAG CGGGGGATAT GGTGCTGAGA ATGGTCGCAC AAACCATGCA ACAAGCGGTG
CGAGAAAACG ATATTGTTGC CCGTTTAGGC GGGGATGAAT TTGCGATTGT GCTCTTTAAT
TGCCCCAGTA AATCTGCGGC AGAAATACTG GAACAGGTCG TGGCGGATAT TGCCGCCATC
CAGTTTCATT GGCACGGACA ATCTTATGTC CTTACTGCCA GTCTGGGGGC AATACCATTG
ACCCAACAAA CTGAATCCGC TTCGCAAGCG ATGCGTTTGG CCGATATTGC CTGCTACAAG
GCCAAACATG CTGGCCGCAA CCAATTGTCA CTCACCTCTT GA
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| Protein sequence | MALYPASFDD HVFRLLIEAV DDYAIYIIDA KGHVLTWNNG AERNTGYCAE EVIGQSFELF
YTPEDLVNGL SVKGLKHANQ FGHYESQSWR VRKNGKRFWG NVTLSALHNS ENILQGFVHV
TRDLTDQWQR DNALRKSEEL FRHLISEVED CAIYMIDTAG RILTWNKGGE RHEGYTREEI
IGEHFTLLFT QEDISAGVPE KSLAKAVAEG NFQTEGWHVR KNNIRYWASV AISPIHDDQG
NLLGFTKIVR DLTERHQREE TLRISEERFR LMVDSVEDYA ILMLDPWGRV NTWNHGAQHK
IGYASNEIIG QHFGCLFLPE DLVAGLPGKL LKTAASASRI EYEGWLVRKD ITRYWALTVI
TAIHDHNGKL LGYTKLIRDI SERKQREDAL RASEAARYEE REQLHQVLSS IPDGIISLNS
EGRVVLMNPK AEEMTGCRQN ESCGLPIEEV FILWSPLQDK NQLEAFSQCL AEGRQTLLPE
GHYLVSRWGE RQEIRCSASP IRDRDNIVTG AVVVFQDVTR ARHEQRALQY QASHDMLTGL
INRRRLEERL TLAINQLAHD GQHILCYVDL DYFKDVNDNA GHEAGDMVLR MVAQTMQQAV
RENDIVARLG GDEFAIVLFN CPSKSAAEIL EQVVADIAAI QFHWHGQSYV LTASLGAIPL
TQQTESASQA MRLADIACYK AKHAGRNQLS LTS
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