| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_2469 |
|---|
| Symbol | |
|---|
| ID | 6088919 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 2702505 |
|---|
| End bp | 2704811 |
|---|
| Gene Length | 2307 bp |
|---|
| Protein Length | 768 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641597535 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_001721199 |
|---|
| Protein GI | 170024694 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000279609 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTATCA ACACGATGAA TCAGTCTCTC TCCATAAATA CGGAGCCGAA ACGTTCGGCT
CCTCGTCTTT TGTGCGTCAT GATCGGCGTA GCATTAGGAT CTTTATCCGC ATCTTCATGG
TCCGCAGCAG TGGCTAACAG TACTAAAACG GCCAGCGCAG TCGCAGAGAC CAACAGCGCC
GAGAGTAGCA ATAAAGCGGA TACCATTACC GTGGTTGGGA CACCAGACAC GTTCCGTGCA
GGGGGGAATG ATTTGATCCC GACCTATCTG GATGGACAGG TGGCTAATGG TGGCCGTATT
GGTTTTCTGG GGCAGCAAGA TGCCCGTAAC GTGCCATTCA ATATTATCGG TTACACCTCG
AAAATGATCG AAGATCAGCA AGCGGCGACC ATTGCTGATG TGGTCAAAAA TGACGCTTCG
GTACAAAACG TGCGGGGTTA TGGTAACCCA TCACAGAATT ACCGTATTCG TGGTTTTAAT
CTGGATGGCG ACGATATTTC ATTCGGTGGT TTATTTGGTG TGCTACCGCG CCAGATTGTT
TCTACCAGCA TGGTTGAACG AGTCGAAGTC TTTAAAGGAG CTAATGCCTT TATTAACGGT
ATCTCGCCAA GTGGCAGTGG CGTTGGAGGC ATGATTAATC TGGAACCTAA ACGTGCCGGT
GATACGCCAT TGACTCGCGT TACTGTGGAT TATGGTTCAG CAGCGCAAGT GGGGGGAGGG
CTGGATGTCG GACGTCGCTA TGGTGATAAC GATCAATATG GCGTGCGGGT TAACGTACTG
CATCGTGAAG GTGAAACGGC CATCAAAGAT GAGAAGAACC GCCTAACCGC GGTGTCTACC
GGCCTTGACT ACCGTAGTGA TCGCGCGCGG ACCTCATTGG ATGTGGGTTA CCAAAAGCAA
ACTATTCATC ATATGCGTAC CACCGTGGGT GTCGGTGCGG TGACCGTTAT TCCTGAACCG
CCGTCAACCA CACTGAACTA TGGTCAACCG TGGGTTTATA CCGATTTGGA GACCACGTTT
GGTATGTTGC GTAGCGAGTA TGATGTTAGC CAGAACTGGA CGGTTTATGG TTCCATCGGG
GCCAGCCATA ACGAAGAAAC GGGGCAATAC GGCTCGCCAA TCCTGACGGA TAACAGCGGC
AATGCGACGA TCAGCCGTTT ATATGTGCCT TATATTTCTG AGTCTATTGC CGGTTTAGGT
GGTATTCGTG GGCATTTTGA TACTGGTTTT ATCACCCATA AAGTGAATTT AGGGTATGCA
ACTAATTATC GGACAACCAA ATCTGCCTTT AATATGTCCG AGAGTATCAA TACCAATATC
TATAATCCGG GGGTCATACC TTTCCCGCCA ACATCGACTA ATCCCAATTT TTATAGTCCC
AACCAAGATC CTACGTTGAC GAGTCAAGTT AGGGCTTCCG GCTTCTCATT GTCCGATACC
TTATCGATGA TGGATGACAA AGTTCAGCTG ATGCTGGGGG TACGCCGCCA GGATGTCACT
ATCCGTAATT TTAATAATGG CGTACCAAAC AGTGCTGGCT CATTAGATGC GATGAAAGTG
ACGCCAATTT ATGGTGTGCT GGTGAGGCCA TGGGAGAAGG TGTCTCTGTA TGCCAACCAT
ATTGAAGCGT TGGGGCCGGG TAAGTCCGCA CCTTATAGCT ACAGTAATGC GAGTGGCGTG
ACGACGCCTG TGGCTAACGC AGGCCAAATC CCTGGTATTG TTCACTCCAA ACAAAATGAA
GTCGGCGTGA AATTCGATAA CCAGCGCTAT GGCGGGACAT TGGCTTTATT TGAAATTACC
CGCCCGACGG GCACGGTTGA TCCCGCGACC AATACTTATG GTTTCTATGG CGAACAGCGT
AACCGGGGTG TTGAACTGAA TGTCTTTGGT GAGCCGGTAT TGGGTACTCG TTTGTTAGGG
AGTGCGGTTT GGTTAGATCC TAAACTGACT AAAACCCAAA ATGGGACGAA CAACGGTAAC
TATGCTGTCG GTGTTGCTCG TTACCAATTA GTGTTCGGCG GCGAGTACGA TATCCCTTCA
GTAGAAGGGC TGACCGCCAC TGGCACCCTG ACACGTTCTG GATCCCAGTA TGCCAATGAT
GCGAATACCT TGAAAATTAA ACCGTGGACC CGCCTGGATC TGGGCGTGCG CTATACCATG
CCAATGAAAG AGACTAACCT GATATGGCGC GCTAACCTTG AAAACGTGAC TAACGAGCGT
TATTGGGAAT CGATAGAAGA TAGCGGCGTT TACCTGTATC AGGGCGATCC ACGTACGCTG
AAATTATCCG TCTCCATGGA CTTCTGA
|
|---|
| Protein sequence | MGINTMNQSL SINTEPKRSA PRLLCVMIGV ALGSLSASSW SAAVANSTKT ASAVAETNSA
ESSNKADTIT VVGTPDTFRA GGNDLIPTYL DGQVANGGRI GFLGQQDARN VPFNIIGYTS
KMIEDQQAAT IADVVKNDAS VQNVRGYGNP SQNYRIRGFN LDGDDISFGG LFGVLPRQIV
STSMVERVEV FKGANAFING ISPSGSGVGG MINLEPKRAG DTPLTRVTVD YGSAAQVGGG
LDVGRRYGDN DQYGVRVNVL HREGETAIKD EKNRLTAVST GLDYRSDRAR TSLDVGYQKQ
TIHHMRTTVG VGAVTVIPEP PSTTLNYGQP WVYTDLETTF GMLRSEYDVS QNWTVYGSIG
ASHNEETGQY GSPILTDNSG NATISRLYVP YISESIAGLG GIRGHFDTGF ITHKVNLGYA
TNYRTTKSAF NMSESINTNI YNPGVIPFPP TSTNPNFYSP NQDPTLTSQV RASGFSLSDT
LSMMDDKVQL MLGVRRQDVT IRNFNNGVPN SAGSLDAMKV TPIYGVLVRP WEKVSLYANH
IEALGPGKSA PYSYSNASGV TTPVANAGQI PGIVHSKQNE VGVKFDNQRY GGTLALFEIT
RPTGTVDPAT NTYGFYGEQR NRGVELNVFG EPVLGTRLLG SAVWLDPKLT KTQNGTNNGN
YAVGVARYQL VFGGEYDIPS VEGLTATGTL TRSGSQYAND ANTLKIKPWT RLDLGVRYTM
PMKETNLIWR ANLENVTNER YWESIEDSGV YLYQGDPRTL KLSVSMDF
|
|---|
| |