Gene YPK_2380 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_2380 
SymbolfliA 
ID6087579 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp2613625 
End bp2614347 
Gene Length723 bp 
Protein Length240 aa 
Translation table11 
GC content53% 
IMG OID641597446 
Productflagellar biosynthesis sigma factor 
Protein accessionYP_001721110 
Protein GI170024605 
COG category[K] Transcription 
COG ID[COG1191] DNA-directed RNA polymerase specialized sigma subunit 
TIGRFAM ID[TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGTGATT TGTATACCGC CGAAGGCGTG ATGGATAAGA ATTCCCTCTG GAAACGCTAT 
GTTCCTTTGG TTCGCCATGA AGCATTGCGT CTACAGGTGC GTCTACCCGC CAGCGTGGAG
TTGGACGATT TATTGCAGGC TGGGGGGATT GGCCTGCTGA ATGCTGTCGA GCGCTATGAT
GCTTTACAAG GCACCGCGTT TACTACGTAT GCGGTACAGC GCATACGGGG GGCGATGCTT
GATGAACTGC GTAGCCGTGA TTGGGCACCT CGCAGTGTGC GCCGTAATGC ACGGGAAGTG
GCCAGTGCCA TGCAGCAAGT CGAACAGCGA GTAGGGCGTC CGGCGACCGA ACAGGAAGTC
GCGCAGGTTC TTGATATTGG CTTGGTTGAG TACCGCCAGA TCCTGTTGGA CACCAACAAT
AGCCAACTTT TCTCCTACGA CGAATGGCGT GAAGAGCACG GCGAAAGTGT CGAACCCCTG
TTGGAAGGGC ATGAAGATGC CAATCCACTA AAACACTTGT TGGAAGGTAA TCTGCGTCAG
CGCGTGATTG AAGCGATAGA GGCGTTGCCA GAACGCGAAA AAATGGTGCT TACGTTGTAT
TACCAGGAAG AGCTGAATTT GAAAGAAATT GGTGCGGTGC TTGAAGTTGG GGAGTCCCGC
GTCAGTCAAC TTCATAGCCA AGCGATAAAA CGCTTACGCG CCCGCCTAAA TAACGACGCT
TAA
 
Protein sequence
MSDLYTAEGV MDKNSLWKRY VPLVRHEALR LQVRLPASVE LDDLLQAGGI GLLNAVERYD 
ALQGTAFTTY AVQRIRGAML DELRSRDWAP RSVRRNAREV ASAMQQVEQR VGRPATEQEV
AQVLDIGLVE YRQILLDTNN SQLFSYDEWR EEHGESVEPL LEGHEDANPL KHLLEGNLRQ
RVIEAIEALP EREKMVLTLY YQEELNLKEI GAVLEVGESR VSQLHSQAIK RLRARLNNDA