| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_2367 |
|---|
| Symbol | |
|---|
| ID | 6088850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 2601729 |
|---|
| End bp | 2603213 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641597433 |
|---|
| Product | sodium/proline symporter |
|---|
| Protein accession | YP_001721097 |
|---|
| Protein GI | 170024592 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0591] Na+/proline symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR02121] sodium/proline symporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0234397 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCATGA ATACGCCGAT GCTGGTGACA TTTTTAGTTT ACATTTTGGG GATGATATTA
ATCGGGTTGA TCGCCTATCG GGCGACCAAT AACTTCGATG ACTACATCTT GGGTGGCCGG
CGTTTAGGCA GTGTCGTCAC CGCGTTATCC GCGGGTGCTT CCGATATGAG TGGCTGGTTA
TTAATGGGGC TACCGGGTGC GGTTTTTTTG TCCGGTATTT CCGAAAGTTG GATAGCCATA
GGCTTGACAA TCGGTGCTTA TCTTAATTGG AAATGGGTGG CAGGCCGTTT ACGGGTTCAT
ACCGAAGCCA ATAATAATGC CCTGACATTA CCCGATTATT TCACCAGTCG CTTTGAAGAC
AAGAGTAAAT TACTGCGGGT CATATCCGCT GTGGTTATCT TAGTCTTCTT TACTATTTAC
TGTGCTTCAG GGATTGTGGC CGGTGCGCGT TTGTTCGAAA GCACTTTCGG TATGGACTAC
GGAACCGCAT TATGGGCAGG GGCCGCCGCG ACCATCATCT ATACCTTTAT TGGGGGGTTC
CTGGCCGTAA GCTGGACAGA TACTGTACAG GCGACGTTAA TGATTTTCGC CCTGATCCTG
ACGCCAATTA TCGTGATTCT TGCTGTTGGG GGGATAGATA CCTCAATGAT GGTGATCGCG
GCGAAAAACC CCGCAAATAT TGATATGTTC AAAGGGTTGA ATCTGGTGGC GATCCTCTCG
CTGTTGGGAT GGGGGTTGGG CTACTTTGGT CAGCCACATA TTTTGGCTCG CTTCATGGCG
GCAGACTCTC ATCGTACTAT CCGTAGTGCC CGCCGTATTA GTATGACCTG GATGATCCTT
TGTCTGGCGG GGACTATCGC AGTAGGCTTC TTTGGCATTG CTTACTTTGA AAATAACCCT
GAGCAAGCAG GGAATGTGAG CCAAAATGGT GAGCGGGTAT TTATCGAATT AGCTAAGCTG
CTGTTCAACC CGTGGATTGC CGGTATTCTG TTGTCAGCCA TTCTGGCTGC GGTTATGAGT
ACCTTGAGTT GTCAATTATT GGTGTGCTCT AGCGCACTGA CCGAAGATTT ATATAAAGCA
TTCTTGCGTA AAAAAGCCAG CCAAAAAGAA CTCGTCTGGG TGGGCCGTGC CATGGTGTTA
TTAGTTGCAT TGATAGCTAT TGCACTGGCG GCAGATCCTG ATAATCGGGT CCTCGGATTA
GTCAGCTATG CATGGGCAGG CTTCGGTGCA GCTTTTGGGC CAGTGGTCCT TATCTCGGTG
CTGTGGCCAC GAATGACACG TAATGGTGCG TTGGTGGGAA TGCTGGTCGG TGCCATCACG
GTGCTTGTCT GGAAACAGTA TGGCTGGTTA GATCTGTATG AAATTATTCC AGGCTTCTTG
TTTGCCAGTT TGGCTATTTT TGTCGTCAGC CTGATGGGCC GCGAGCCAAG TAATGCCATC
ACCGAACGTT TCCATAAAGC CGAGGCGGAG TTTAAAACAG TTTAA
|
|---|
| Protein sequence | MTMNTPMLVT FLVYILGMIL IGLIAYRATN NFDDYILGGR RLGSVVTALS AGASDMSGWL
LMGLPGAVFL SGISESWIAI GLTIGAYLNW KWVAGRLRVH TEANNNALTL PDYFTSRFED
KSKLLRVISA VVILVFFTIY CASGIVAGAR LFESTFGMDY GTALWAGAAA TIIYTFIGGF
LAVSWTDTVQ ATLMIFALIL TPIIVILAVG GIDTSMMVIA AKNPANIDMF KGLNLVAILS
LLGWGLGYFG QPHILARFMA ADSHRTIRSA RRISMTWMIL CLAGTIAVGF FGIAYFENNP
EQAGNVSQNG ERVFIELAKL LFNPWIAGIL LSAILAAVMS TLSCQLLVCS SALTEDLYKA
FLRKKASQKE LVWVGRAMVL LVALIAIALA ADPDNRVLGL VSYAWAGFGA AFGPVVLISV
LWPRMTRNGA LVGMLVGAIT VLVWKQYGWL DLYEIIPGFL FASLAIFVVS LMGREPSNAI
TERFHKAEAE FKTV
|
|---|
| |