| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_2224 |
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| Symbol | |
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| ID | 6088201 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 2464981 |
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| End bp | 2466063 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641597289 |
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| Product | porin |
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| Protein accession | YP_001720958 |
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| Protein GI | 170024453 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0575083 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAACA TCGCGATGGC TTTGGCAGCC ACACTGGGTA TCATTCCAGC TCTTTCAAGT
GCAGCGGAAA TTTATAATAA AGATGGCAAC AAGTTGGATT TTTATGGGCG GGTTGCTGCG
AAATACCTAT TTAAAAAACA GAGCAATGAA GATGCAACTT ATGTGCGTAT TGGTTTCAAG
GGTGAAACAA AAATAAATAG CCAGCTAACT GGTTTCGGTC AGTGGGAATA TAACATCGCA
GCTAACAACA CAGAATCTCA GGGTGATAAG GGCAATAAAA CCCGTTTGGG CTTTGCGGGT
CTGAAGTTAG CTGATTACGG GTCTTTCGAC TATGGCCGCA ACTATGGTGT TGTCTATGAC
GTGCTGTCCT ATACCGATAT GTTGCCTGAA TTTGGTGGTG ATTCCATGGC AGCGACGGAT
AATTACATGA CGGCCCGCTC TACTGGCCTG GCAACCTACC GTAACGATAA TTTCTTCGGA
CTTGTGGAGG GCTTAAAAGT TGCCGCTCAG TATCAGGGGC GTAACGAAGA CGGTGATGTT
ACCCGAAATG AACGTTCTAT CCAAAAGGCC AATGGTGATG GTTTCGGTTT GTCTTTTAAT
TATCAAAACA TTCAGGGCAG CGGCGTCAGT TTTGCAGGCG CATACTCATC ATCTAATCGT
ACCGAGGGCC AGAAAGAATT AGTGAACAGT GCTGCGGGTG ACAAAGCTCA AGCTTGGGCT
ACTGGGCTAA AATACGATGC CAATCAGGCC TATATTGCAG CAATGTATGG CGAAACACTA
AACATGACGC CGTACAAAAG ACTGATCGCG AACAAAACCC AAAACGTAGA GTTGGTCGCT
CAATACCAGT TTGAGAATGG TATCCGCCCG TCTCTTGCCT ACATACAATC TAAAGGTAAG
GATCTGGCGG GGGTCGGCGA TACGGATCTG GTGAAATATG CTGAAATCGG TGTGACTTAC
CATTTCAACA AGAACATGTA CACCTATGTT GATTATAAGA TTAATTTATT GGATAACGAT
AAGAACCCAT TGGGCTTGAA TACGGATGAT GTTGTTGCGG TAAACTTGAC TTACCGTTTT
TAA
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| Protein sequence | MKNIAMALAA TLGIIPALSS AAEIYNKDGN KLDFYGRVAA KYLFKKQSNE DATYVRIGFK
GETKINSQLT GFGQWEYNIA ANNTESQGDK GNKTRLGFAG LKLADYGSFD YGRNYGVVYD
VLSYTDMLPE FGGDSMAATD NYMTARSTGL ATYRNDNFFG LVEGLKVAAQ YQGRNEDGDV
TRNERSIQKA NGDGFGLSFN YQNIQGSGVS FAGAYSSSNR TEGQKELVNS AAGDKAQAWA
TGLKYDANQA YIAAMYGETL NMTPYKRLIA NKTQNVELVA QYQFENGIRP SLAYIQSKGK
DLAGVGDTDL VKYAEIGVTY HFNKNMYTYV DYKINLLDND KNPLGLNTDD VVAVNLTYRF
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