| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_2162 |
|---|
| Symbol | |
|---|
| ID | 6088025 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 2399696 |
|---|
| End bp | 2400901 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641597228 |
|---|
| Product | multidrug resistance protein MdtH |
|---|
| Protein accession | YP_001720899 |
|---|
| Protein GI | 170024394 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.976846 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTGG TATCGCAAGC TCGAAGCTTG GGTAAGTATT TTTTATTGTT TGATAATTTA
TTAGTTGTGT TGGGATTTTT TGTCGTATTC CCGCTCATTT CTATCCGATT TGTCGATCAA
TTAGGTTGGG CTGCGTTGGT CGTGGGCCTT GCTTTAGGCC TAAGGCAATT GGTTCAACAG
GGATTGGGGA TCTTTGGCGG GGCCATTGCC GACCGGTTCG GTGCCAAACC GATGATTGTC
ACCGGGATGC TAATGCGAGC CGCGGGTTTT GCCTTGATGG CCATGGCGGA TGAACCTTGG
ATACTTTGGC TGGCCTGTGC GCTGTCAGGG CTGGGCGGCA CCCTGTTTGA TCCACCACGC
ACAGCGTTGG TCATCAAGTT GACCCGCCCC CATGAACGAG GCCGTTTTTA TTCGCTGCTA
ATGATGCAGG ATAGCGCCGG AGCGGTAATT GGTGCGTTGA TTGGCAGTTG GCTGCTGCAA
TATGACTTCC ACTTCGTCTG TTGGACCGGT GCGGCTATTT TTGTGCTGGC AGCCGGTTGG
AACGCCTGGT TACTCCCCGC TTACCGTATC TCGACCGTTC GCGCCCCGAT GAAAGAGGGC
CTGATGCGAG TGTTGCGTGA TCGCCGTTTT GTGACCTATG TGCTGACGCT CACTGGCTAT
TATATGCTCG CCGTACAGGT CATGCTGATG CTGCCGATCG TGGTGAATGA ACTTGCTGGC
TCACCGGCCG CAGTTAAATG GATGTATGCC ATTGAAGCCG CACTTTCTCT GACGCTGCTT
TATCCGCTGG CCCGTTGGAG TGAAAAGCGT TTTAGCCTTG AGCAACGCTT AATGGCCGGC
TTACTGATCA TGACGCTCAG TTTGTTCCCC ATCGGGATGA TCACTCATCT ACAAACACTG
TTCATGTTTA TCTGTTTCTT CTATATGGGA TCAATCCTCG CTGAACCCGC CCGTGAAACA
CTGGGAGCAT CGCTGGCTGA CTCCCGCGCC CGTGGTAGCT ATATGGGCTT TAGTCGCCTT
GGATTAGCGC TGGGGGGGGC ATTAGGTTAT ACCGGCGGTG GCTGGATGTA CGATACCGGC
AAAACCCTTG ATATGCCTGA GCTACCCTGG TTCTTGCTGG GTATTATTGG ACTCATTACA
TTGGCAGGGC TTTACTGGCA ATTCAATCGA CGGCGGATTG AATCTGCCAT GTTGAGCAGC
AGCTAA
|
|---|
| Protein sequence | MALVSQARSL GKYFLLFDNL LVVLGFFVVF PLISIRFVDQ LGWAALVVGL ALGLRQLVQQ
GLGIFGGAIA DRFGAKPMIV TGMLMRAAGF ALMAMADEPW ILWLACALSG LGGTLFDPPR
TALVIKLTRP HERGRFYSLL MMQDSAGAVI GALIGSWLLQ YDFHFVCWTG AAIFVLAAGW
NAWLLPAYRI STVRAPMKEG LMRVLRDRRF VTYVLTLTGY YMLAVQVMLM LPIVVNELAG
SPAAVKWMYA IEAALSLTLL YPLARWSEKR FSLEQRLMAG LLIMTLSLFP IGMITHLQTL
FMFICFFYMG SILAEPARET LGASLADSRA RGSYMGFSRL GLALGGALGY TGGGWMYDTG
KTLDMPELPW FLLGIIGLIT LAGLYWQFNR RRIESAMLSS S
|
|---|
| |