| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_2106 |
|---|
| Symbol | |
|---|
| ID | 6088041 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 2335324 |
|---|
| End bp | 2336517 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641597174 |
|---|
| Product | Bcr/CflA subfamily drug resistance transporter |
|---|
| Protein accession | YP_001720845 |
|---|
| Protein GI | 170024340 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.758817 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAAT TCCTTTTCCT GCTATTAAGC TTGATTTTAC TTGGCCCTTT GGGGATCGAT
CTCTATCTAC CGACCATTCC AGCCATTGCA AAAGGGCTGA ATAGTAGTGA GTCTCTGATT
CAATCAACTA TTGCGCTGTT TATTCTCGTG CTGGGTATCG GGCAACTGAT TGCTGGGCCA
TTGGTTGATA AATATGGCCG TAAGCCAATC GCTATTATCG GTATTGTTCT TTACATGCTG
GGTGCCGCGA TGGCCGCTCT GGCCGTGGAT CCAGTCATGT TCGTCAGCTC CCGCTTGTTA
CAAGGTGTCT CGGTATGCTG CACAGCCGTG GTGGCCTTCA GTGGCGTCCG TGACCGCCTT
AGCGGCAATG AAGCCGCACG TGCTTTTGGC TTCCTTAATG GCACGTTGAA TATTGTCCCC
GCATTGGCCC CGCTATTAGG TGGTTTACTG GCCGAAGCCT TTGGCTGGCG GGCACCGTTC
TGGTTCCTGG CATTATACGG ATTACTGGTT TTAGTCTTAA TCATTATGTT CTTACCCGAA
ACCCGCCCGG CGAATACTCA ACCAATAAAT GGCCTGCCAA TAAAAAACTA CCTGCGTATT
TTGCGTGATG GCCGCTTTTT GGTATTTGCT CTGGTCAATG CAGGGGCCAT GGGCATGGCA
TTAACCTATG TATCATTGGC ACCGAATGTA TTGATGGTTG ATGCAGGCCT CAGCCCGTTA
CAATTTTCGC TGGCATTTGG GGCTAATGGC TTCTGGATTA TGGCAGTCAG TTTTTTTGCT
AACCGGATTA TTCAAAAAGT GGGCCGCCCT ACCTGCCTGA TGATCGGTAG CTTATTGATG
GCCTTAGGCT GTTTTGGCTT GCTATTTGGT CTGACACAAC TGTCCGTTGA TGTGCAGCAT
CACTGGCTGG TTTATATGTT ACCGGTTGCC AGCGCCTGTG CCGGTTTAGC CTTTATGATG
GGGCCTGCCA CCAGTTATGC TCTAGAACCC TATGCGAATG AAGCGGGTGT TGCCTCAGCG
TTAGTGGGAT TTGTTCAAAT GGCTGGGGGC GCTGCATTAG GCCTGTTGGC GATGGCACTG
CCGATTGAAC CTAAGTTGTC ACTGGCTATC GTGATGCTGG CTGGCTGTTT ACTGGCGTGG
CAAGCGCGCC GAGCCAGTAA ACATGTCCGC GGCAAGTTGG AAGAAATACA CTAA
|
|---|
| Protein sequence | MQKFLFLLLS LILLGPLGID LYLPTIPAIA KGLNSSESLI QSTIALFILV LGIGQLIAGP
LVDKYGRKPI AIIGIVLYML GAAMAALAVD PVMFVSSRLL QGVSVCCTAV VAFSGVRDRL
SGNEAARAFG FLNGTLNIVP ALAPLLGGLL AEAFGWRAPF WFLALYGLLV LVLIIMFLPE
TRPANTQPIN GLPIKNYLRI LRDGRFLVFA LVNAGAMGMA LTYVSLAPNV LMVDAGLSPL
QFSLAFGANG FWIMAVSFFA NRIIQKVGRP TCLMIGSLLM ALGCFGLLFG LTQLSVDVQH
HWLVYMLPVA SACAGLAFMM GPATSYALEP YANEAGVASA LVGFVQMAGG AALGLLAMAL
PIEPKLSLAI VMLAGCLLAW QARRASKHVR GKLEEIH
|
|---|
| |