Gene YPK_2088 details

Gene Information

• Locus tag: YPK_2088
• ID: 6088357
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: -
• Start bp: 2316138
• End bp: 2318066
• Gene Length: 1929 bp
• Protein Length: 642 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 641597156
• Product: DNA topoisomerase III
• Protein accession: YP_001720827
• Protein GI: 170024322
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0550] Topoisomerase IA
• TIGRFAM ID: [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00112487
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGCGAC TGTTTATTGC CGAAAAACCC AGTTTAGCGC GAGCGATTGC AGATATTTTG 
CCAAAACCGC ATCGTCGAGG TGATGGATTC ATCGCCTGTG GTAATGATCA AATGGTGACC 
TGGTGTGTTG GTCATTTACT CGAACAAGCC CAGCCGGATG CTTATGACAG CCGTTATGCA 
CGTTGGTCAT TAGCGGACTT ACCGATCATT CCTGAAAAAT GGCAGCTACA ACCTCGTCCT 
TCCGTCAGCA AACAACTCAA TGTGATTAAG CAACTGTTAC AGCAAGCCGA TGAAGTGGTC 
CATGCTGGCG ACCCGGATAG AGAAGGGCAA CTGTTAGTTG ATGAGGTGCT GGATTATTTG 
GGATTGGCCG CAGAGAAACG GCAAAATGTT CGTCGTTGCT TGATTAACGA TTTAAACCCA 
CAGGCGGTTG AGCGTGCAGT GGAGCGCTTG CGTTATAACC GCGAGTTTAT CCCGCTGTGT 
GTTTCTGCGT TGGCTCGAGC CAGAGCCGAT TGGCTCTATG GCATCAATAT GACTCGCGCC 
TATACCATTC TTGGGCGCAA TGCGGGCTAT GACGGTGTTT TATCCGTCGG GCGGGTACAA 
ACGCCCGTAT TGGGGCTGGT TGTTCGCCGT GATGAAGAGA TTGAAAGCTT CATTCCCAAA 
GATTTTTTTG AAGTTAAAGC CCACATAGTG ACGCCTGCAG ACGAACGTTT TATTGCTCTC 
TGGCAGCCGA GTGACTCCTG CGAATCTTAT CAGGACGAAG AAGGGCGCTT GTTGCATCGG 
CCGCTTGCAG AACATGTTGT CAATCGCATA ACCGGCCAGC CCGCGCTGGT GACATCCTAT 
AATGATAAAC GGGAATCGGA AACGGCACCG TTGCCATTCT CCTTGTCTAC ATTACAAATC 
GAAGCTGCAA AACGTTTCGG CCTCAGTGCT CAGCAAGTAT TGGATATTTG CCAACGGTTG 
TATGAAACGC ACAAATTGAT TACGTATCCC CGTTCGGATT GCCGATATCT ACCTGAAGAG 
CATTTTGCCG GGCGTCATTC GGTGCTTAAT GCCATTAGTC TTCATCAGTC AGACCTTTTG 
CCGCTTGAGG TCATGGATAG TGATCGGCGC AACCGCTGCT GGGATGATAA AAAAGTCGAT 
GCGCACCACG CTATTATCCC AACCGCACGT GCCAGCAAAG TGAATTTGAC GACGGATGAA 
GGCAAAGTAT ACCGGTTGGT GGCACAGCAA TATCTGATGC AATTCTGTCC AGATGCACAG 
TTCCGTAAGT GTGTGATTGA ATTGGATATC GCTGGCGGGA AATTTATTGC CAAGGCACGC 
TTTTTGGCCG AGGCGGGATG GCGGACCTTA CTGGGCAGTA AAGAGCGTGA TGAAGAGAAC 
GAAGGAGCGC CATTGCCGGT GGTAGCCAAA GGGGCTGAAT TATTATGCGA ACGCGGTGAG 
GTTGTTGAAC GACAAACTCA GCCACCCCGG CCTTTCACCG ACGCCAGTTT ATTATCGGCG 
ATGACAGGAA TTGCGCGTTT CGTACAGGAT AAAGAACTGA AAAAAGTTTT GCGAGCCACC 
GATGGCTTGG GTACGGAAGC CACTCGAGCA GGTATTATCG AACTGCTCTT CAAGCGCACT 
TTTCTCTTTA AGAAAGGGCG TTATATACAT GCCAGCCCTG CGGGACGCGC GTTGATTCAT 
GCATTACCGG ATATTGCGGC ACGGCCAGAT ATGACAGCAC ATTGGGAATC AACGTTGACA 
CAAATCAGTG AAAAAAACTG CCGCTATCAA GATTTTATGC AACCACTGGT GATGACATTG 
CAGGATTTAA TTAGTCAGGC GAAACAAAAT CGTTCTCCAC AGGTTTTCCG TGGGTTACCC 
GCCGGCCCTT CAGGGGCACC CAAGAAACGT AAAAAAATAT CGTCTAAGGC CAAGGAGAGT 
AAATCATGA 

 

Protein sequence

MMRLFIAEKP SLARAIADIL PKPHRRGDGF IACGNDQMVT WCVGHLLEQA QPDAYDSRYA 
RWSLADLPII PEKWQLQPRP SVSKQLNVIK QLLQQADEVV HAGDPDREGQ LLVDEVLDYL 
GLAAEKRQNV RRCLINDLNP QAVERAVERL RYNREFIPLC VSALARARAD WLYGINMTRA 
YTILGRNAGY DGVLSVGRVQ TPVLGLVVRR DEEIESFIPK DFFEVKAHIV TPADERFIAL 
WQPSDSCESY QDEEGRLLHR PLAEHVVNRI TGQPALVTSY NDKRESETAP LPFSLSTLQI 
EAAKRFGLSA QQVLDICQRL YETHKLITYP RSDCRYLPEE HFAGRHSVLN AISLHQSDLL 
PLEVMDSDRR NRCWDDKKVD AHHAIIPTAR ASKVNLTTDE GKVYRLVAQQ YLMQFCPDAQ 
FRKCVIELDI AGGKFIAKAR FLAEAGWRTL LGSKERDEEN EGAPLPVVAK GAELLCERGE 
VVERQTQPPR PFTDASLLSA MTGIARFVQD KELKKVLRAT DGLGTEATRA GIIELLFKRT 
FLFKKGRYIH ASPAGRALIH ALPDIAARPD MTAHWESTLT QISEKNCRYQ DFMQPLVMTL 
QDLISQAKQN RSPQVFRGLP AGPSGAPKKR KKISSKAKES KS