Gene YPK_2010 details

Gene Information

• Locus tag: YPK_2010
• Symbol: rnfD
• ID: 6088352
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Yersinia pseudotuberculosis YPIII
• Kingdom: Bacteria
• Replicon accession: NC_010465
• Strand: +
• Start bp: 2238649
• End bp: 2239743
• Gene Length: 1095 bp
• Protein Length: 364 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 641597077
• Product: electron transport complex protein RnfD
• Protein accession: YP_001720750
• Protein GI: 170024245
• COG category: [C] Energy production and conversion
• COG ID: [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD
• TIGRFAM ID: [TIGR01946] electron transport complex, RnfABCDGE type, D subunit

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.079391
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAATTCA GGCCTGTAAC ACCGACCCAG AACAAAGGGT TGCAGATTGC CAGTTCCCCT 
TTTACCCACA ATCAACGCAG TACCCGTCGT ATTATGCTGC TGGTTATTCT GGCCTGTATT 
CCGGGGATTA TCGCCCAGAC TTACTTCTTC GGTTATGGCA GCCTGATTCA AGTCATGCTG 
GCTATGATCA CTGCACTGTT GGCCGAAGGT GCCGTATTGC AGTTACGTAA ACAACCCGTC 
ATGGCGCGGT TACAAGATAA CTCTGCCCTG CTGACTGCCT TATTGTTGGG GATAAGCCTC 
CCCCCATTGG CCCCCTGGTG GATGATCGTG CTGGGCACGC TATTTGCTAT TGTCATTGCC 
AAACAACTCT ATGGTGGCCT AGGGCAGAAC CCGTTTAACC CGGCAATGGT CGGTTATGTT 
GTGCTCCTTA TTTCATTTCC GGTACAAATG ACCAGTTGGC TGCCACCGCT ACCGTTGCAA 
GGAACGTCGG TGGGATTCTA TGACAGTCTC TTAACCATTT TCACCGGTTA TACCCACAGT 
GGTGAGAATA TTCATCAGCT CCAAGTTGGC TATGACGGCA TCAGCCAAGC GACGCCACTG 
GATACGTTTA AGACCTCGCT ACGTTCACAG CCAGCAGATC AAATTCTGCA ACAGCCCATA 
TTTGGCGGTG TGCTGGCGGG TTTAGGCTGG CAATGGGTTA ATACCGGCTT TCTGGTTGGC 
GGCTTATTGC TACTGTGGCG TAAAGCTATT CACTGGCATA TTCCCGTGAG CTTCCTGCTC 
GCCTTAGGAG GTTGTGCCGC AGTGAGCTGG ATGATTGCTC CACAAAGCTT TGCCTCACCA 
ATGCTACATT TGTTCTCCGG TGCCACCATG TTAGGTGCAT TTTTCATTGC TACCGATCCT 
GTCAGTGCCT CTACAACACC CCGTGGCCGC CTGATATTTG GTGCCCTCAT TGGTATTCTG 
GTGTGGCTAA TCCGGGTATA TGGCGGCTAT CCGGATGGTG TTGCTTTTGC CGTGTTGCTC 
GCCAATATTA CAGTTCCGTT GATTGACCAC TATACCCAAC CTCGGGTCTA TGGCCATAAA 
AGCGGGCACA AATAA 

 

Protein sequence

MKFRPVTPTQ NKGLQIASSP FTHNQRSTRR IMLLVILACI PGIIAQTYFF GYGSLIQVML 
AMITALLAEG AVLQLRKQPV MARLQDNSAL LTALLLGISL PPLAPWWMIV LGTLFAIVIA 
KQLYGGLGQN PFNPAMVGYV VLLISFPVQM TSWLPPLPLQ GTSVGFYDSL LTIFTGYTHS 
GENIHQLQVG YDGISQATPL DTFKTSLRSQ PADQILQQPI FGGVLAGLGW QWVNTGFLVG 
GLLLLWRKAI HWHIPVSFLL ALGGCAAVSW MIAPQSFASP MLHLFSGATM LGAFFIATDP 
VSASTTPRGR LIFGALIGIL VWLIRVYGGY PDGVAFAVLL ANITVPLIDH YTQPRVYGHK 
SGHK