| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_2003 |
|---|
| Symbol | |
|---|
| ID | 6088398 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 2229281 |
|---|
| End bp | 2230651 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641597070 |
|---|
| Product | HlyD family type I secretion membrane fusion protein |
|---|
| Protein accession | YP_001720743 |
|---|
| Protein GI | 170024238 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.295152 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGCGT TTATTCAGCA CATAAAAAAC CGCTGGACGC GTTGTTTTAC CCCCGCGCGT
ACCCGTGATG AATATGATTT TTTGCCTGCT TATTTGGAAA TTGTCGAGCG CCCGATTGCC
CCATTAGCCC GTCGTACAGC GTGGTTACTC ATACTGACAT TATTGCTGGT ATTGATATGG
GCGATTATTG GAAAACTTGA TATCCATGCC TCAGCCAGCG GCAAAGTGAT TGTTGCGGAA
CATTCCAAAA TTATCCAACC CGCAGAACCT GGAGTGGTGA CGGAAATTAA TGTCCGAGAT
GGGGATACCG TTGATGCCGG GCAGGTGCTT ATTGCATTAA ACCCTATTGG CATTGATGCC
GAAGTACGCA ATATCAATCA GCAACTACAG TATCGTCAGT TAGAAGCCGC TCGGTTAGTG
GCTCTCCTGG CTGATGAACC GCTAAAAAAT TTCAAGCCGC CTTATAACAG CCCTGAATCT
CTGGTGGTGG CATCCAGAGC ACTGTTAACA AAAGAATATG CCGAAGTGAC AGCTGAATTG
TCACGTCAGG ATAGCGAACT GGCGGTGAAT CAGGCGCATC TTCAGGCCGG AATTGAGCAC
AACTCTCATC AAAAAGCATT GCTGAAAAAT ATTCATCGGC GGCTACAAGC GTCGCGTACG
CTGGCTAAAT CTAAGTCAAT TGCCGAGGTC GAGCTTCTGG TACAGGAGCG GGAATGGTTA
ACGGCAACGG CTGAAGCCAA CCGTTTGCAG AGTGAACAAG ATATTTTACG GGCCAAAGCA
CACAGTTTGG CGCAAACCCG TATGCACTAT CTGGCGAAAA TAGACCGTGA TAATCGGGAG
CGATTGAATA AAACCCACGA AATTATTCAT CAGCTTCAGC AAGAGCAAAT CAAAATGATG
GATAAACAAC GCCAGCAAAC CCTAAGAGCT CCGGTGGCTG GCGTTATCCA GCAATTAGCG
GTTCATACCT TAGGGGGGGT GGTTACCACG GCGCAACCGT TAATGGTTCT GGTTCCGGAG
GATTATCAGT TGGAACTTGA TGTCATGATC CTCAATAAAG ATGTGGGGTT CGTCCTGCCA
GGCCAAGCGG TAGAAGTCAA AGTTGACAGT TTCCCTTATA CCCGCTTCGG TACGTTATCC
GGGGAAGTAA AACATGTTTC CCGTGATGCA ATGGAAGATC AACAACGGGG ACTGGTATTT
CCAGCGCGTA TCCGTTTACT CAGCGATACC CTGATGGTGG AGGGTAAACC GGTGCGGTTG
TCTGCGGGGA TGGCCATCAA TGCGGAAATT AAAACAGGTC GCCGTCGGGT CATTGATTAT
CTGCTGAGTC CATTGCAGCA ATATCAATCT GAAGCCATGA GGGAGCGCTA A
|
|---|
| Protein sequence | MSAFIQHIKN RWTRCFTPAR TRDEYDFLPA YLEIVERPIA PLARRTAWLL ILTLLLVLIW
AIIGKLDIHA SASGKVIVAE HSKIIQPAEP GVVTEINVRD GDTVDAGQVL IALNPIGIDA
EVRNINQQLQ YRQLEAARLV ALLADEPLKN FKPPYNSPES LVVASRALLT KEYAEVTAEL
SRQDSELAVN QAHLQAGIEH NSHQKALLKN IHRRLQASRT LAKSKSIAEV ELLVQEREWL
TATAEANRLQ SEQDILRAKA HSLAQTRMHY LAKIDRDNRE RLNKTHEIIH QLQQEQIKMM
DKQRQQTLRA PVAGVIQQLA VHTLGGVVTT AQPLMVLVPE DYQLELDVMI LNKDVGFVLP
GQAVEVKVDS FPYTRFGTLS GEVKHVSRDA MEDQQRGLVF PARIRLLSDT LMVEGKPVRL
SAGMAINAEI KTGRRRVIDY LLSPLQQYQS EAMRER
|
|---|
| |