| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1925 |
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| Symbol | |
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| ID | 6088824 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 2133536 |
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| End bp | 2137423 |
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| Gene Length | 3888 bp |
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| Protein Length | 1295 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641596996 |
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| Product | ATP-dependent RNA helicase HrpA |
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| Protein accession | YP_001720669 |
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| Protein GI | 170024164 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1643] HrpA-like helicases |
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| TIGRFAM ID | [TIGR01967] ATP-dependent helicase HrpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAATCTT CGCTCACAGC ATTATCCACT CAACTTGGTG AGTTGATGCT CCGTGACCAA
CAGCGCATTC AGCGTCGGCT ACATAGCGCA CGAAAAATCA ATAACCCTGA CGCCATACAG
GCGATTACTC ACGAAATTGA AGCCGAAATC GCGATAGCAA TGCAGCGAGT AACCCGCCGT
CGGGCGGCTT GTCCGGCGAT CAGTTATCCA GATAATCTGC CCGTCAGCCA GAAGAAACAG
GATATTTATA ACGCTATCCG TGACCATCAG GTGATCATTG TCGCCGGTGA GACTGGGTCG
GGTAAAACGA CACAGTTGCC GAAAATCTGC CTGGAACTGG GGCGGGGGGT GAAAGGCGTT
ATCGGCCACA CTCAGCCACG CCGTTTGGCC GCCCGGACGG TGGCTAACCG CATTGCCGAT
GAGCTGGATA CTTCGCTTGG CGGCTGTGTT GGTTACAAAG TTCGTTTTAA CGATCAGGTC
GGTGAAAATA CACTGGTCAA ATTAATGACG GATGGCATTC TGCTGGCTGA AATTCAGCAA
GATCGCCTGC TGATGCAATA TGACACGTTG ATCATTGATG AGGCCCACGA ACGTAGCCTT
AACATTGATT TTATCTTGGG CTATTTACGT GAGTTATTAC CTAAACGCCC TGATCTGAAA
GTGATCATTA CGTCAGCGAC TATTGACCCG CAACGCTTCT CACAACATTT CAATAACGCC
CCAATTATTG AGGTCTCTGG CCGTACCTAC CCGGTGGAGG TGCGCTACCG GCCGATTGTG
GATGATGCCG ATGATGTTGA TCGGGACCAA TTGCAGGCCA TTTTTGATGC AGTCGATGAG
TTGGGCCGTG AAAGCGCCGG GGATATCTTA ATCTTTATGA GCGGTGAGCG CGAAATCCGT
GACACAGCGG ATGCGTTGAT AAAGCAAAAT TTGCCACACA CCGAAGTGCT ACCGCTGTAT
GCCCGCTTAT CAAACAGTGA GCAGAACCGG GTGTTTCAGT CACATCATGG GCGGCGAATT
GTGTTGGCAA CCAACGTGGC AGAAACGTCA CTCACGGTGC CGGGTATCAA ATATGTTATC
GATCCCGGCA CAGCACGTAT CAGCCGTTAC AGTTTCCGTA CCAAGGTCCA GCGGTTACCG
ATTGAGCCTA TTTCTCAGGC ATCGGCTAAT CAGCGTAAAG GGCGGTGTGG CCGTGTCTCT
GACGGTATTT GTATTCGTCT TTATTCCGAG CAAGATTTTC TCTCCCGCCC TGAGTTCACG
GATCCAGAAA TCCTACGGAC CAATCTGGCT TCGGTGATCT TGCAAATGAC CTCTCTGGGG
CTAGGGGATA TCGCTGCATT TCCCTTTGTT GAAGCACCGG ATAAACGCAA TATCCAAGAC
GGTGTAAGGT TACTGGAGGA ACTGGGGGCC ATTCAGACCG CCAGTAACGG GCATCAGCAA
TTGACCCCAT TGGGCCGCCA GTTAGCCCAA CTTCCTGTCG ATCCACGCTT GGCCAGAATG
GTATTGCAAG CGCAGAAAAG TGGCTGCGTA CGTGAATTAA TGATTATCAC CTCGGCGTTA
TCTATTCAGG ATCCGCGTGA GCGTCCGGTA GATAAACAGC AGGCCTCTGA TGAAAAACAC
CGCCGTTTTG CGGATAAAGA TTCCGATTTT CTCGCCTTTG TTAATCTGTG GGATTACCTC
AAAGAACAAC AAAAAGCGTT GTCATCAGCA CAGTTTCGTA AGCTTTGCCG CAGCGATTAC
CTGAATTACC TACGGGTGCG TGAATGGCAG GATATTTACA CTCAGTTGCG GCAGGTCGTT
AAAGAGTTAG GGATACCCGT CAACAGTGTT GCCGCAGACT ACCGCAGTGT ACATACCGCG
ATACTGACCG GTTTACTTTC TCACATTGGG CAGAAAGATG TTGAGAAGCA AGAGTTTACC
GGTGCTCGTA ACGCCCGCTT TGCTATTTTC CCCGGCTCCG GCTTATTCAA AAAGCCCCCC
AAGTGGGTCA TGGTGGCTGA ATTGGTCGAG ACCAGCCGTT TATGGGGGCG CATTGCTGCA
CGTATTGAAC CCGAATGGAT TGAGCCTTTA GCCCAGCACC TGGTGAAACA CCATTACAGC
GATCCACATT GGGAGAAAGC TCAGGGCGCG GTAATGGCCA GCGAGAAAGT GACCTTATTC
GGCTTACCGA TTGTTACGGA GCGTAAGATC AATTACGGCC CGATCGATCC ACTGCTCTGC
CGTGAGTTGT TTATTCGCCA CGGGTTGGTT GAAGGTGACT GGCAGACGCG GCACGCGTTC
TTCCGAATGA ATCTTAAGCT ATTGGCTGAA GTGGAAGAGT TGGAACACAA ATCCCGTCGG
CGGGATATTC TGGTCGATGA CGAGACACTC TTTAACTTTT ATGATCAAAG AATTGGTCGT
GATGTTATCT CTGCCCGCCA TTTTGATAGC TGGTGGAAGC AAGCGAGCCA GACGAAACCC
GAGCTGCTGA ACTTTGAAAA AACCATGCTT ATCAAAGAGG GTGCGAACAA AGTAAACCCG
CTTGATTATC CGAATTTTTG GTATCAAGGG GAGCTAAAAC TCCGTCTGTC TTATCAGTTT
GAACCCGGCA CCGATGCCGA TGGTGTCACA GTACACATTC CATTACCTAT TCTGAACCAG
ATCCATGAGC AGGGGTTTGA CTGGCAGATC CCAGGGATTC GCCGCGAACT GGTGATAGCA
CTGATTAAAT CATTGCCCAA ACCGGTACGG CGTAATTTTG TTCCGGCACC TAATTATGCC
GATGCTTTTC TGGCACGGGT AACACCACTC GAAACGGGTT TATTGGAGGC TTTGGAGCGT
GAATTACGCC GCATGACTGG CGTGACGGTG TCACGTGATA GTTGGCAGTT AGATCAGGTG
CCTGACCATC TGAAAATAAC GTTTCGTGTG CTGGACGATA AAAACCGTAT TTTGCGAGAA
GGCAAAGATC TTGCCGCCCT AAAGTTACAG TTGCAAGAGA AAGTACAGGA AACACTTTCT
GCCGTCGCGG ATGATGGTAT TGAACAAAAT AACTTACATA TCTGGAGTTT TGGCGATCTC
CCTATCTGCT ATGAGCAACG GCGCGGTGGC TATGAAGTCA AAGCCTATCC AGCGTTAGTG
GATGAAAAAG ACAGTGTTGC CATTCGTTTG TTCGATACAG AATCGCAACA ACAACAGGCT
ATGTGGCAGG GTACCCGGCG TTTATTGCTA CTCAATATTC CTTCGCCGAT TAAATACTTA
CATGAGAAAT TGCCGAATAA ATCCAAACTG GGTCTCTATT TCAATACGTA TGGCAACGTA
ATGGATCTGA TTGATGACTG CATCGCCTGT GGCGTAGATA AACTGGTGGC ACAGCATGGT
GGCCCGGTCT GGCAGGAGGC TGATTTTGCT CGTTTACAAG AAAAAGTCCG TGCGGAACTG
AATGACACCG TGGTGGATAT TGCCAAGCAG GTTGAGCAGA TCCTCACGCT GGTGTTCAGT
ATTAATAAGC GGTTGAAAGG CCGGATCGAT ATTTCACTGG CATTGGCGCT TTCTGATATT
AAAGCTCAGC TTGCTGGCCT TATCTATCGT GGATTTGTCA CGAGTAATGG CTGGAAGCGT
TTGCCTGATA CTTTACGTTA TTTAAAGGCT ATTGAGCGGC GCTTAGAAAA ACTGGCGGTT
GATCCTCATC GCGATAGGGC GCAAATGCTG CGAATTGAGC ATGTTCAGCA AGTATGGCAA
CAGTGGTTGA ATAAATTACC GCCTAAACGT CAGCAAGATG AAGAGGTTAA AGAAGTCCGT
TGGATGATTG AAGAACTGCG TGTCAGTTTA TTTGCTCAAC AACTGGGCAC CCCTTATCCG
GTGTCTGACA AACGTATCTT ACAAACGATC GAACAGCTTT CTGTCTGA
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| Protein sequence | MKSSLTALST QLGELMLRDQ QRIQRRLHSA RKINNPDAIQ AITHEIEAEI AIAMQRVTRR
RAACPAISYP DNLPVSQKKQ DIYNAIRDHQ VIIVAGETGS GKTTQLPKIC LELGRGVKGV
IGHTQPRRLA ARTVANRIAD ELDTSLGGCV GYKVRFNDQV GENTLVKLMT DGILLAEIQQ
DRLLMQYDTL IIDEAHERSL NIDFILGYLR ELLPKRPDLK VIITSATIDP QRFSQHFNNA
PIIEVSGRTY PVEVRYRPIV DDADDVDRDQ LQAIFDAVDE LGRESAGDIL IFMSGEREIR
DTADALIKQN LPHTEVLPLY ARLSNSEQNR VFQSHHGRRI VLATNVAETS LTVPGIKYVI
DPGTARISRY SFRTKVQRLP IEPISQASAN QRKGRCGRVS DGICIRLYSE QDFLSRPEFT
DPEILRTNLA SVILQMTSLG LGDIAAFPFV EAPDKRNIQD GVRLLEELGA IQTASNGHQQ
LTPLGRQLAQ LPVDPRLARM VLQAQKSGCV RELMIITSAL SIQDPRERPV DKQQASDEKH
RRFADKDSDF LAFVNLWDYL KEQQKALSSA QFRKLCRSDY LNYLRVREWQ DIYTQLRQVV
KELGIPVNSV AADYRSVHTA ILTGLLSHIG QKDVEKQEFT GARNARFAIF PGSGLFKKPP
KWVMVAELVE TSRLWGRIAA RIEPEWIEPL AQHLVKHHYS DPHWEKAQGA VMASEKVTLF
GLPIVTERKI NYGPIDPLLC RELFIRHGLV EGDWQTRHAF FRMNLKLLAE VEELEHKSRR
RDILVDDETL FNFYDQRIGR DVISARHFDS WWKQASQTKP ELLNFEKTML IKEGANKVNP
LDYPNFWYQG ELKLRLSYQF EPGTDADGVT VHIPLPILNQ IHEQGFDWQI PGIRRELVIA
LIKSLPKPVR RNFVPAPNYA DAFLARVTPL ETGLLEALER ELRRMTGVTV SRDSWQLDQV
PDHLKITFRV LDDKNRILRE GKDLAALKLQ LQEKVQETLS AVADDGIEQN NLHIWSFGDL
PICYEQRRGG YEVKAYPALV DEKDSVAIRL FDTESQQQQA MWQGTRRLLL LNIPSPIKYL
HEKLPNKSKL GLYFNTYGNV MDLIDDCIAC GVDKLVAQHG GPVWQEADFA RLQEKVRAEL
NDTVVDIAKQ VEQILTLVFS INKRLKGRID ISLALALSDI KAQLAGLIYR GFVTSNGWKR
LPDTLRYLKA IERRLEKLAV DPHRDRAQML RIEHVQQVWQ QWLNKLPPKR QQDEEVKEVR
WMIEELRVSL FAQQLGTPYP VSDKRILQTI EQLSV
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