| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1886 |
|---|
| Symbol | tppB |
|---|
| ID | 6089462 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 2090946 |
|---|
| End bp | 2092481 |
|---|
| Gene Length | 1536 bp |
|---|
| Protein Length | 511 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641596957 |
|---|
| Product | putative tripeptide transporter permease |
|---|
| Protein accession | YP_001720630 |
|---|
| Protein GI | 170024125 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3104] Dipeptide/tripeptide permease |
|---|
| TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.348979 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGTA GTGAAAAATT AGAGGTCCCA GTGTCAACAG CAAACAACAA CCAACCAGAA
AGCATCAGTA TGAACGCTTT CAAACAACCA AAAGCGTTTT ATCTTATTTT CTCTATAGAA
CTTTGGGAGC GCTTTGGTTA CTACGGCCTG CAAGGGATCA TGGCTGTCTA CCTGGTAAAA
ATGCTCGGGA TGAGCGAAGC CGATTCAATC ACCTTGTTCT CCTCATTCAG CGCCTTGGTG
TATGGTTTTG TCGCCATTGG TGGCTGGTTA GGCGATAAAG TCCTTGGGGC GAAGCGGGTT
ATTGTCCTTG GTGCACTCAC GCTAGCGGTC GGTTATTCCA TGATAGCCTA CTCCGGCCAC
GAGATTTTCT GGGTTTATCT GGGCATGGCA ACCATTGCCG TTGGTAATGG CTTATTTAAA
GCCAACCCTT CATCTCTACT TTCAACCTGC TACAGCAAGG ACGATCCGCG TTTGGACGGT
GCATTTACCA TGTACTATAT GTCCATCAAT ATCGGTTCGT TCTTCTCTAT GTTGGCAACC
CCATGGCTGG CGGCTAAATA TGGCTGGAGC GTTGCGTTTT CTCTGAGCGT TGTGGGGATG
TTGATTACAC TGGTCAATTT CTGGTTCTGC CGTAAATGGG TAAAAAACCA AGGCTCCAAA
CCAGACTTTC TCCCTCTGCA ATTTAAAAAA TTACTGATGG TCTTAGTGGG TATTATCGCG
TTGATAACCC TTTCCAACTG GTTACTCCAC AACCAGATTA TTGCACGCTG GGCGCTGGCA
CTGGTCTCCC TAGGGATTAT CTTCATCTTT ACCAAAGAAA CGCTCTTCTT GCAGGGCATT
GCGCGCCGCA GAATGATTGT CGCCTTCTTG TTGATGCTGG AAGCGGTCAT TTTCTTTGTG
CTATACAGCC AAATGCCAAC CTCACTGAAC TTCTTCGCTA TCCACAATGT GGAGCACTCA
ATCTTTGGCA TTGGTTTTGA ACCAGAACAA TTTCAGGCAC TGAATCCCTT CTGGATCATG
CTTGCCAGCC CTATTTTGGC GGCTATCTAT AATAAGATGG GCGACCGTCT ACCAATGCCG
CATAAGTTTG CCTTTGGTAT GATGCTCTGC TCCGCTGCCT TCTTGGTGCT GCCATGGGGA
GCAAGCTTTG CTAATGAACA CGGTATTGTG TCTGTTAACT GGCTTATCTT AAGTTATGCA
CTGCAAAGTA TCGGTGAGTT GATGATCTCC GGCTTAGGTC TGGCCATGGT TGCTCAATTA
GTACCTCAGC GTTTAATGGG CTTCATCATG GGGTCATGGT TCCTGACTAC CGCGGCCGCG
GCTCTGATCG CGGGTAAAGT GGCCGCATTG ACTGCGGTCC CAAGTGATGC CATCACTGAC
GCACATGCAT CCCTGGCGAT TTATAGCCAC GTATTTATGC AAATTGGTAT TGTGACCGCC
ATTATCGCCG TACTGATGAT GCTGACTGCA CCGAAACTGT ATCGTATGAC GCTGGCCCCT
AGCGATCACA ACGATGTCAA AATCATGACC CAATAA
|
|---|
| Protein sequence | MTGSEKLEVP VSTANNNQPE SISMNAFKQP KAFYLIFSIE LWERFGYYGL QGIMAVYLVK
MLGMSEADSI TLFSSFSALV YGFVAIGGWL GDKVLGAKRV IVLGALTLAV GYSMIAYSGH
EIFWVYLGMA TIAVGNGLFK ANPSSLLSTC YSKDDPRLDG AFTMYYMSIN IGSFFSMLAT
PWLAAKYGWS VAFSLSVVGM LITLVNFWFC RKWVKNQGSK PDFLPLQFKK LLMVLVGIIA
LITLSNWLLH NQIIARWALA LVSLGIIFIF TKETLFLQGI ARRRMIVAFL LMLEAVIFFV
LYSQMPTSLN FFAIHNVEHS IFGIGFEPEQ FQALNPFWIM LASPILAAIY NKMGDRLPMP
HKFAFGMMLC SAAFLVLPWG ASFANEHGIV SVNWLILSYA LQSIGELMIS GLGLAMVAQL
VPQRLMGFIM GSWFLTTAAA ALIAGKVAAL TAVPSDAITD AHASLAIYSH VFMQIGIVTA
IIAVLMMLTA PKLYRMTLAP SDHNDVKIMT Q
|
|---|
| |