| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1792 |
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| Symbol | |
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| ID | 6087174 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 1990827 |
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| End bp | 1991993 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641596860 |
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| Product | oligogalacturonide lyase |
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| Protein accession | YP_001720536 |
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| Protein GI | 170024031 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.512963 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAAAG GTAAACAAAT CCCCCTGACA TATCACACTT ATCAGGATGC CTCTACCGGC
GCACAAGTGA CCCGACTGAC GCCCCCTGAT GTCACTTGTC ACCGTAACTA TTTCTATCAG
AAATGTTTCA CCCGTGATGG TAGTAAACTG TTGTTCGGTG GTGCTTTTGA TGGCCCATGG
AATTACTATT TACTGGATCT TAACAGCCGG GTCGCAACAC AACTGACTGA AGGGCGCGGT
GATAATACCT TTGGGGGTTT CCTCTCACCA GAAGATGATG CGCTGTTCTA CGTGAAGGAT
GGCCGTAATT TGATGCGTGT TGATCTCGCC ACATTAGAAG AGAACGTGGT TTATCAGGTG
CCAGAAGAGT GGGTCGGTTA TGGAACGTGG GTAGCAAATT CTGATTGTAC TAAATTGGTC
GGTATTGAGA TTAAGCGGGA AGACTGGCAA CCGTTGACAG ATTGGAAGAA ATTCCACGAA
TTTTATTTCA CCAAACCGTG TTGCCGCCTG ATGCGCGTTG ATTTGAAAAC TGGCGAATCA
GCGGTTATCC TGCAAGAAAA TCAGTGGCTT GGTCACCCTA TTTATCGCCC TTATGACGAT
AGCACCGTGG CGTTCTGCCA TGAAGGGCCA CACGATCTGG TTGATGCACG TATGTGGCTC
ATCAATGAAG ATGGCAGCAA TATGCGTAAA GTGAAAACCC ATGCAGAAGG TGAGAGCTGT
ACGCATGAAT TCTGGGTTCC AGATGGTTCA GCATTGGTTT ATGTCTCTTA TTTGAAAGGC
AGTTCCGATC GTTTTATTTA TAGTGCTGAT CCAGTGACAT TGAAAAATCG TCAATTGACT
TCTATGCCTG CCTGCTCACA TTTAATGAGT AATTATGATG GCACACTGAT GGTAGGTGAT
GGGTCTGACG CACCGGTTGA TGTGCAAGAT AACAGCGGTT ATAAGATCGA AAATGATCCT
TTCTTGTATG TCTTCAATAT AAAGAATGGG ACACAGCATC GTATTGCTCG ACATGATACA
TCATGGCAGG TATTTGAAGG TGATCGCCAG GTTACGCATC CTCATCCTTC TTTTACGCCT
GATGATAAGC AGGTCCTGTT TACGTCAGAC GTCCACGGCA AGCCCGCATT ATATATGGTG
ACATTGCCTG AGTCTGTTTG GCAATAG
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| Protein sequence | MAKGKQIPLT YHTYQDASTG AQVTRLTPPD VTCHRNYFYQ KCFTRDGSKL LFGGAFDGPW
NYYLLDLNSR VATQLTEGRG DNTFGGFLSP EDDALFYVKD GRNLMRVDLA TLEENVVYQV
PEEWVGYGTW VANSDCTKLV GIEIKREDWQ PLTDWKKFHE FYFTKPCCRL MRVDLKTGES
AVILQENQWL GHPIYRPYDD STVAFCHEGP HDLVDARMWL INEDGSNMRK VKTHAEGESC
THEFWVPDGS ALVYVSYLKG SSDRFIYSAD PVTLKNRQLT SMPACSHLMS NYDGTLMVGD
GSDAPVDVQD NSGYKIENDP FLYVFNIKNG TQHRIARHDT SWQVFEGDRQ VTHPHPSFTP
DDKQVLFTSD VHGKPALYMV TLPESVWQ
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