Gene YPK_1789 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_1789 
Symbol 
ID6088688 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp1987076 
End bp1988239 
Gene Length1164 bp 
Protein Length387 aa 
Translation table11 
GC content46% 
IMG OID641596857 
Productfimbrial protein 
Protein accessionYP_001720533 
Protein GI170024028 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3539] P pilus assembly protein, pilin FimA 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00112621 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGCTT ATTTCTATAG GGTGAAAACA GTGATTCGGC ATATCAACAT GTACCTGCGC 
GTTTATGCTC ATGTCCGTTC TGTTGCTACG CTACTGATAT TGGTCGTTGT GGCTGGGGGG
CCAAGCAGTA AAGTGTGGGC TGAAGGCCTC GGGATAAATT GTGACTATAC TGGCAGTATT
TATATCAATC CCCCTACCAG TATTATTCGT GTTAAGCCTA ATGCGGCCAT AGGTGATCCT
ATTGGTTCAT GGATGACCAT CAGTGCACCT GAAGTTTGGT CATGCGCGCT ATTACCCGCT
TACCAGTCCC GGGATGTGCG GGCAGGGATT CTGGTTTATT CTCCTTATAA TCCATTACTT
ACGACCAATA TTGATGGTGG TAATTACAAA GTTTTCCGCA CTGGCGATAC TAATCCTGGC
TTGGGAATTG CCGTACGTTT TCGTGCTATC GGGGCCGGTT TTAGCAGCGA TTGGACCCAA
CTAGAGGGTT TTGGGCTCGT AGACGGCACG GTGAGTGCCC CATTAATAGG ACCGATTCCT
TATAATGATG GGATTAAATT TCCCTTAGGA ATGGAAATGC AAATTCACTA TGTGAAGGCG
AGTGAGGAGC TAAGATCGGG TGGCGTAAGG ATATTTGATT TTGCTTATCT TTACCATCGG
CGCTCCATTG ATGGTGTGCC GGACAATAGT GGCGCTCGCT ACAGGATTGT TCAGGTCCCG
GCAAATAGCA TTGATATTCA GATAATGACG CAAACCTGTA CCACGCCTGA TGTGGTCGTG
AATCTACCTG AGGTCAATTC GCGGCAGTTT ACCGGCATTG GTACGGTGAA AGCACTTAAA
GCTTTTAATC TGAATTTTAA TCATTGCCCA GGTGGACTAG ACGGTATTAA TTATAAATTT
GGTGCGACGA CGAGTATTCT GGATTCGGCT AATGGTGTTG TTGCGTTGGA TGCCAACTCG
ACTGCTGAGG GGGTGGGGGT ATTACTGCGC AGCCAATCAG ATGCGGCGAT TGAATTGGAT
AAGGAATACA CGATGAGTGG TTATGACACC AGTAGCACAC AAAGTTACAC GGTCCCCATG
CAGGCGGGAA TTTACCAAAT AGAAAACACC GTGACACCTG GTTCAGTAAA AGGTGAGTTC
ACATTTACGT TGATCTATAA ATGA
 
Protein sequence
MSAYFYRVKT VIRHINMYLR VYAHVRSVAT LLILVVVAGG PSSKVWAEGL GINCDYTGSI 
YINPPTSIIR VKPNAAIGDP IGSWMTISAP EVWSCALLPA YQSRDVRAGI LVYSPYNPLL
TTNIDGGNYK VFRTGDTNPG LGIAVRFRAI GAGFSSDWTQ LEGFGLVDGT VSAPLIGPIP
YNDGIKFPLG MEMQIHYVKA SEELRSGGVR IFDFAYLYHR RSIDGVPDNS GARYRIVQVP
ANSIDIQIMT QTCTTPDVVV NLPEVNSRQF TGIGTVKALK AFNLNFNHCP GGLDGINYKF
GATTSILDSA NGVVALDANS TAEGVGVLLR SQSDAAIELD KEYTMSGYDT SSTQSYTVPM
QAGIYQIENT VTPGSVKGEF TFTLIYK