Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_1789 |
Symbol | |
ID | 6088688 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 1987076 |
End bp | 1988239 |
Gene Length | 1164 bp |
Protein Length | 387 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641596857 |
Product | fimbrial protein |
Protein accession | YP_001720533 |
Protein GI | 170024028 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3539] P pilus assembly protein, pilin FimA |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00112621 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGTGCTT ATTTCTATAG GGTGAAAACA GTGATTCGGC ATATCAACAT GTACCTGCGC GTTTATGCTC ATGTCCGTTC TGTTGCTACG CTACTGATAT TGGTCGTTGT GGCTGGGGGG CCAAGCAGTA AAGTGTGGGC TGAAGGCCTC GGGATAAATT GTGACTATAC TGGCAGTATT TATATCAATC CCCCTACCAG TATTATTCGT GTTAAGCCTA ATGCGGCCAT AGGTGATCCT ATTGGTTCAT GGATGACCAT CAGTGCACCT GAAGTTTGGT CATGCGCGCT ATTACCCGCT TACCAGTCCC GGGATGTGCG GGCAGGGATT CTGGTTTATT CTCCTTATAA TCCATTACTT ACGACCAATA TTGATGGTGG TAATTACAAA GTTTTCCGCA CTGGCGATAC TAATCCTGGC TTGGGAATTG CCGTACGTTT TCGTGCTATC GGGGCCGGTT TTAGCAGCGA TTGGACCCAA CTAGAGGGTT TTGGGCTCGT AGACGGCACG GTGAGTGCCC CATTAATAGG ACCGATTCCT TATAATGATG GGATTAAATT TCCCTTAGGA ATGGAAATGC AAATTCACTA TGTGAAGGCG AGTGAGGAGC TAAGATCGGG TGGCGTAAGG ATATTTGATT TTGCTTATCT TTACCATCGG CGCTCCATTG ATGGTGTGCC GGACAATAGT GGCGCTCGCT ACAGGATTGT TCAGGTCCCG GCAAATAGCA TTGATATTCA GATAATGACG CAAACCTGTA CCACGCCTGA TGTGGTCGTG AATCTACCTG AGGTCAATTC GCGGCAGTTT ACCGGCATTG GTACGGTGAA AGCACTTAAA GCTTTTAATC TGAATTTTAA TCATTGCCCA GGTGGACTAG ACGGTATTAA TTATAAATTT GGTGCGACGA CGAGTATTCT GGATTCGGCT AATGGTGTTG TTGCGTTGGA TGCCAACTCG ACTGCTGAGG GGGTGGGGGT ATTACTGCGC AGCCAATCAG ATGCGGCGAT TGAATTGGAT AAGGAATACA CGATGAGTGG TTATGACACC AGTAGCACAC AAAGTTACAC GGTCCCCATG CAGGCGGGAA TTTACCAAAT AGAAAACACC GTGACACCTG GTTCAGTAAA AGGTGAGTTC ACATTTACGT TGATCTATAA ATGA
|
Protein sequence | MSAYFYRVKT VIRHINMYLR VYAHVRSVAT LLILVVVAGG PSSKVWAEGL GINCDYTGSI YINPPTSIIR VKPNAAIGDP IGSWMTISAP EVWSCALLPA YQSRDVRAGI LVYSPYNPLL TTNIDGGNYK VFRTGDTNPG LGIAVRFRAI GAGFSSDWTQ LEGFGLVDGT VSAPLIGPIP YNDGIKFPLG MEMQIHYVKA SEELRSGGVR IFDFAYLYHR RSIDGVPDNS GARYRIVQVP ANSIDIQIMT QTCTTPDVVV NLPEVNSRQF TGIGTVKALK AFNLNFNHCP GGLDGINYKF GATTSILDSA NGVVALDANS TAEGVGVLLR SQSDAAIELD KEYTMSGYDT SSTQSYTVPM QAGIYQIENT VTPGSVKGEF TFTLIYK
|
| |