| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1779 |
|---|
| Symbol | |
|---|
| ID | 6088638 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 1973450 |
|---|
| End bp | 1976080 |
|---|
| Gene Length | 2631 bp |
|---|
| Protein Length | 876 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641596847 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001720523 |
|---|
| Protein GI | 170024018 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3008] Paraquat-inducible protein B |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.284568 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAGG AAACACCGAG TACACCGACT GAGGCTCATG TAAAACATAA ACGCCGGTTC
TCCCCCTTCT GGCTACTGCC TTTTATTGCG CTACTGATCA CGGGCTGGCT GATTTATAAC
AATTGGCAAG AACGTGGGAC GGAAATCACT ATTGATTTTC AGTCAACTGC TGGAATTGTT
GCTGGCCGCA CACCCATCCG CTATCAAGGC GTGGATGTAG GTTTGGTTCA ATCCATCAGA
TTGGATGATA ACCTGCGTAA CATTAAAGTG ACCGCCAGTA TCAAAAATGA TATGGAGGAT
TCACTACGTG AAGGTACCCA GTTCTGGCTA GTGACCCCCA AAGCCTCTCT GGCCGGTGTT
TCTGGATTGG ATGCGCTGGT GGGCGGTAAT TATATCGGCA TGATGCCTGG TGAGGGTAAG
CCGCAAAGCC ATTTCACTGC ATTGGATACT CAGCCTAAAT TCCGCCTGAA TACAGGCGAA
TTAATGATTC ATCTCTCTGC CCCTGACCTC GGCTCACTCA ATAACGGCTC GTTGGTTTAC
TATCGTAAAA TTCCGGTTGG CAAAGTGTAT GACTACACGA TCGCCCCTGA TAATAACGGG
GTTATTATTG ATGTCCTGAT TGATAGACGA TTTGCCAATT TGGTGAAAAA GGACTCTCGA
TTCTGGAATG TTTCTGGTTT TAAAGCTGAT TTCAGCCTAA GCGGTGCCTC GGTGCAAATG
GAGAGTCTGG CGGCGCTGGT CAATGGCGCA ATTGCTTTCG ATTCCCCACA AAATAGCCAA
GATGCCGCGC CAGATCAGCC TTTCCAACTT TATTCTGATT TAGCGCACAG TCAGCGCGGG
GTGGCCATCA CCCTGGATTT ACCAGGGGGA AGTCACTTGA GTGAGGGCCG TACCCCCCTG
ATTTATCAGG GGTTGCAAGT TGGTACTTTG ACTAAAATGA CGCTTCAACC AGACCAAAAA
GTGACGGGAG AGCTAACCAT TGATCCCTCC GTAGTGAATT TGATGCGTAG TGGCACACGC
ATTGAAATGA ATAGCCCGCG GATCAGCCTC AGTAATGCCA ACGTAAGTGA ACTGCTTACT
GGTAATACAT TAGAGCTGAT CCCAGGCGAC GGTGAGCCAC AACAACATTT TACCGTACTG
CCCAGCAGTA AAAGCCTGTT ACAACAACCC AATGTCCTTG AATTGCAACT CACCGCGCCA
CAAAGCTATG GCATTGATGT CGGCCAGCCT ATTTCACTAC GTGGTATCAA GATTGGTCAG
GTGTTAACCC GCGAACTGTC AGCCGATGGC GTCACCTTTA CGGCCGCGAT AGAAGCGAAA
TATCGCCATC TGGTGCACAA GGACAGCAAA TTTGTGGCAA ACAGCCGCCT TGATGTCAAC
GTGGGGATTG ATGGCGTTAA CGTGCAAGGC GCCAGCGCAC AAGAATGGAT TGATGGCGGT
ATTCTGCTTT TATCAGGTAG CAAAGGCGAG GCACTGAAAC AATACCCCCT TTACAGTAGC
GTGGCAAAAG CAACTGATGG GATTTTAGGC AGTTCACCGG CAACGACCCT AACGCTAACG
GCCAGCAGTT TGCCTGATAT ACAGGCCGGT TCTGTGGTGT TGTACCGTAA GTTTCAGGTG
GGTGAAATTA CTCACGTACG CCCTAAAGCC AACGCCTTCG AAGTGGATGT TTACATTCAA
CCCGAGTATC GCAATCTACT AACCGAAAAG AGTATTTTTT GGTCAGAAGG GGGAGCAAAA
GTACAACTGA GTGGGAGTGG CCTTACTGTA CAAGCCTCAC CGCTTAACCG GGCCTTAAAA
GGGGCCATCA GCTTCGATAA TCTAGAAGGC GTCACTCTGG ATAAAGGGGC CAAGCGGACA
TTGTATAGTA ATGAAACGGC CGCACGGGCC GTGGGTAGCC AGATTATATT GCGTACATTT
GATGCCAGTA AACTGTCGGC GGGTATGCCA ATCCGCTATT TGGGGATCGA TATTGGCCAA
GTTGAGTCGC TGAAGCTGGC ACCCGAGCGT AATGAAGTCT TAGCCAAAGC CGTACTTTAC
CCAGAATATG TGCAAAACTT TACCCGCGCG GGTACCCGTT TCTCCATCGT CTCACCGGAG
ATCTCGGCTG CAGGGGTCAA TAATCTGGAG ACCTTGTTCC AGCCCTACAT TAATGTAGAG
CCCGGTAAAG GGGGGCCCTT GCGCAATTTT GAGTTGCAGA CCGCCACCAT TACTGACTCC
CGTTATCTTG ATGGCCTGAG CATCATACTG GATACCGCTG AAGCGGGTTC GTTGCAAGTT
GGGACGCCAG TCCTGTTCCG TGGGCTTGAA GTTGGCACTG TCACCGGTTT TAATCTGGGT
GCAATGTCCG ATCGAGTGCA GGTATCACTG CGGATAAGCC AAAAGTTTCA GCATCTAGTA
AGACAAAACA CGGTATTTTG GCTAGCATCA GGTTATAACT TTGAGTTCGG TCTGATAGGT
GGTGTGGTGA AAAGCGGGAC CTTCCAGCAG TTTATCCGTG GTGGTATCGC TTTCGCTACG
CCACCAACCA TACCACTGGC ACCGAGAGCC AATGTCAATC AGCACTTTTT GCTCGCCCCC
GAAGAGCCTA AAGATTGGCG AAAATGGGGA ACAGCCATTC CACGTTCTTA A
|
|---|
| Protein sequence | MQQETPSTPT EAHVKHKRRF SPFWLLPFIA LLITGWLIYN NWQERGTEIT IDFQSTAGIV
AGRTPIRYQG VDVGLVQSIR LDDNLRNIKV TASIKNDMED SLREGTQFWL VTPKASLAGV
SGLDALVGGN YIGMMPGEGK PQSHFTALDT QPKFRLNTGE LMIHLSAPDL GSLNNGSLVY
YRKIPVGKVY DYTIAPDNNG VIIDVLIDRR FANLVKKDSR FWNVSGFKAD FSLSGASVQM
ESLAALVNGA IAFDSPQNSQ DAAPDQPFQL YSDLAHSQRG VAITLDLPGG SHLSEGRTPL
IYQGLQVGTL TKMTLQPDQK VTGELTIDPS VVNLMRSGTR IEMNSPRISL SNANVSELLT
GNTLELIPGD GEPQQHFTVL PSSKSLLQQP NVLELQLTAP QSYGIDVGQP ISLRGIKIGQ
VLTRELSADG VTFTAAIEAK YRHLVHKDSK FVANSRLDVN VGIDGVNVQG ASAQEWIDGG
ILLLSGSKGE ALKQYPLYSS VAKATDGILG SSPATTLTLT ASSLPDIQAG SVVLYRKFQV
GEITHVRPKA NAFEVDVYIQ PEYRNLLTEK SIFWSEGGAK VQLSGSGLTV QASPLNRALK
GAISFDNLEG VTLDKGAKRT LYSNETAARA VGSQIILRTF DASKLSAGMP IRYLGIDIGQ
VESLKLAPER NEVLAKAVLY PEYVQNFTRA GTRFSIVSPE ISAAGVNNLE TLFQPYINVE
PGKGGPLRNF ELQTATITDS RYLDGLSIIL DTAEAGSLQV GTPVLFRGLE VGTVTGFNLG
AMSDRVQVSL RISQKFQHLV RQNTVFWLAS GYNFEFGLIG GVVKSGTFQQ FIRGGIAFAT
PPTIPLAPRA NVNQHFLLAP EEPKDWRKWG TAIPRS
|
|---|
| |