Gene YPK_1777 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_1777 
Symbol 
ID6087182 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp1971879 
End bp1972409 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content50% 
IMG OID641596845 
Productspore coat U domain-containing protein 
Protein accessionYP_001720521 
Protein GI170024016 
COG category[S] Function unknown 
COG ID[COG5430] Uncharacterized secreted protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.0475012 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAAAAATC ACACTCTTGT TGTATTCAGT TTAAGTCTCG TGTGCGGTTT ACTGCTATTC 
CAAGCATATC CAGTAAATGC AGTATCAAAA ACAGCCAATA TAACGGTAAC GGCCACGCTA
CTGCCCACCT GCCTTGCGCG TTTTCTGGTC AGTGGCAGCA CAAGTTTTGG CACCTTGGAT
TTTGGATCAA CTGTCGCGTT AACCCAACCA ATCTCGGTGG CAGGTCAAAC CAATAGTGGC
GCTATCACCG TGCAATGCAG CAACGGTACC AGTTTTAACG TATTACTGAG CAGCGGACAG
AGTGGCAATA CCAATAACCG TTATCTGTCC GGGGGGCCAT CAGCCCAGCA AGTGAGCTAC
AACCTGTATA CCAACGCGAC CTATAGTGTC ATCTGGGATG ATGTGGTGGG GGTATCGCAG
GTTGCTACCG GACAAGTCGT CACCATACCG GTTTATGGCC TGGTTCCTGC ACAATCGACG
CCTGCGGTAG GGACCTATAC TGATACCGTT CAGGTCACGG TGAGTTGGTA A
 
Protein sequence
MKNHTLVVFS LSLVCGLLLF QAYPVNAVSK TANITVTATL LPTCLARFLV SGSTSFGTLD 
FGSTVALTQP ISVAGQTNSG AITVQCSNGT SFNVLLSSGQ SGNTNNRYLS GGPSAQQVSY
NLYTNATYSV IWDDVVGVSQ VATGQVVTIP VYGLVPAQST PAVGTYTDTV QVTVSW