| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1774 |
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| Symbol | |
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| ID | 6088278 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 1967968 |
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| End bp | 1970415 |
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| Gene Length | 2448 bp |
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| Protein Length | 815 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641596842 |
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| Product | fimbrial biogenesis outer membrane usher protein |
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| Protein accession | YP_001720518 |
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| Protein GI | 170024013 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.613765 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTATCA GATTCCGGCT ACCGCCATTA TCGGTACTGA TATATGGCTC AATATTGTTA
CCGTCACTGA TACCCTTGAC TATTTTAGGA GGGAGCCTCC CTCCGCCCTC GACATCAACA
ACGATGCCTG ATACTACGTT ATATCTTGAA CTCGTGGTCA ATGACCGTAA CTTTGGGAGT
GCTGTACCTA TTAGTTACCG CAACAACCGT TATTACCTTT CTCAATCACA GCTAAGAACG
ATTGGGCTTC CTATATCAGA GCCACTGGCA CCCGAGATTG CCATTGATAA TATGGCGGGC
GTGAACGTTA AATATGATGG AGAGAACCAA CGCCTATTAA TCAATGTTCC CAGCGAGTGG
CTACCAAAGC AACAAATCGA GGTTACCGAA CAAGATGATT TCAATCTTGC GCAAAGTAGT
TTGGGGGCTT TATTCAATTA CGATATCTAT GCCACACAAG GTTACCCGTA CTCATCTTTA
ACTCATTTTT CAGCATGGAC AGAACAGCGC ATTTTTGATC GTTTTGGCTT GCTCAGTAAT
ACCGGCGTTT ATCGCACCCA CTTCCCAAGT AATAACAACA CAGATGACGC GAAAGGCTAT
ATTCGTTTTG ATACCCAGTG GCAGAAGAAT GACGAAGAAC ATCTGCTGCG TTATAGCGCA
GGTGACCTCA TTACCGGTGC TTTGCCATGG AGCAGTGCGA TACGTCTTGG CGGCATTCAG
ATAGCACGGC ATTTTGCTAT CCGGCCCGAT CTCATAACCT ACCCATTACC ACAATTTTCT
GGTCAGGCCG CAGTCCCCAG CACCGTTGAT CTCTACATTG ATAACTTCAG GACACAATCG
GCCAATATCA ACCCAGGCCC TTTTGTCATC AATAATGCAC CGCGAATCAA TGGTGCAGGC
CAAGCGACTA TCGTCACAAC CGATGCCCTT GGCAGGCAAA TCAGCACATC TGTACCCTTT
TACGTTGCCA GTACACTGCT AAAACCCGGA GTGTGGGATT TCAGTCTCTC GGGGGGTGCC
CTACGTCGTA ATTATGCGAT TCGCTCAGCA GATTACGGTG AAATGGTTGC CAGTGGTGTC
GTTCGTTACG GCACAACACC TTGGTTGACA CTGGAGGGCC GGGGAGACAT CGCCAAAGAA
ATGCATGTAA TTGGGGGTGG CGTTAATTTT CGCATGGGGT TATTGGGTGT CCTAAATAGT
GCATACAGTA TAAGCAACAC ATCGAACGGC GCTTTTAACA ATGTGGCTGA ACCGCTAAAT
ACCAATAATG CCACGTCGAA TAGATTACCG CCCCCTGCAG CGTCACGCCG TGGACGTGGC
AACCAGCGTT CATTAGGCTA TAGCTACAGT AATGCATTCT TTAATTTAAA TGCTCAACAT
ATTATCTCTA GTGATGAATA CAGTGACCTT GCCAATTATA AAACGCCTTC TCTCTTAAGC
CGACGCATGA CTCAACTCAC GGGAAGTCTC AGCCTCGGTA GTTACGGCAC CGTGGGATCG
GGTTACTTTG ATGTCAGGGA TGCTCTTGGC GAACAAACCC GGCTCATTAA TATCAGCTAC
AGCACCTCAC TGTTACGCAA TAGCAACTTT TATAGCGCAC TAAACCGTGA GCTGGGCCGT
AAAGGTTACA ATGTACAACT GGTCTGGAGC ATTCCGTTAG GCCCGCGGGG ATCAAGCAGC
ATCAGTGCAA CCCGCACAAA TGATAACCAA TGGATTCAAC AACTGAATTA TAGCCGTTCA
GCGCCCTCGA ATGGGGGATT GGGCTGGAAC CTCGCTTATG CCAACAGCAC GAATAACAAT
AATCAATACC AACAGGCAGA CATTGTTTGG CGTACTTCAA TGATGGAGAG TCGCATGGGC
CTATATGGTA ACAGTAATAA CTACAACTAT TGGGGGGGAT TAACCGGTTC ATTAGTGGTG
ATGAATAGGA GTGTCTATGC CAGCAATATG ATTAACGATG CTTTTGCTTT GGTATCGACC
AATGGTTTTA GTAATATTCC GGTTAGTTAC GAAAATCAAC TTATTGGCAC AACTAATGCC
AAGGGTTATT TGCTGATCCC GACAGTCGCC TCATATTATC AGGCAAAATT CCAGATTGAC
CCAATGAATT TACCGGCAGA TGTCATGCTA CCCAATGTTG AACGGCGGTT AGCCATTGGT
GAACGCAGTG GCTATTTAAT TAATTTCCCC ATTAAGCGAA TTTCCGCAGT GAATATTAGA
ATTACAGACG CATCAGGCCA AGACTTACCG AAAGGCAGTG CAATATATAC TACCGGTAAC
ATCCCCATAA GTTATGTCGG TTGGGATGGC ATGGTATATA TCGAGCAAGT GGCACAATTA
AATAACCTTA GGATTATACG TGCCGATAAT GGCACACAGT GCTACAGCCA GTTCAAACTA
AAGACGACGG AAGGTATACA GGATGCTGGC ACCACAGTAT GCCGATAG
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| Protein sequence | MIIRFRLPPL SVLIYGSILL PSLIPLTILG GSLPPPSTST TMPDTTLYLE LVVNDRNFGS
AVPISYRNNR YYLSQSQLRT IGLPISEPLA PEIAIDNMAG VNVKYDGENQ RLLINVPSEW
LPKQQIEVTE QDDFNLAQSS LGALFNYDIY ATQGYPYSSL THFSAWTEQR IFDRFGLLSN
TGVYRTHFPS NNNTDDAKGY IRFDTQWQKN DEEHLLRYSA GDLITGALPW SSAIRLGGIQ
IARHFAIRPD LITYPLPQFS GQAAVPSTVD LYIDNFRTQS ANINPGPFVI NNAPRINGAG
QATIVTTDAL GRQISTSVPF YVASTLLKPG VWDFSLSGGA LRRNYAIRSA DYGEMVASGV
VRYGTTPWLT LEGRGDIAKE MHVIGGGVNF RMGLLGVLNS AYSISNTSNG AFNNVAEPLN
TNNATSNRLP PPAASRRGRG NQRSLGYSYS NAFFNLNAQH IISSDEYSDL ANYKTPSLLS
RRMTQLTGSL SLGSYGTVGS GYFDVRDALG EQTRLINISY STSLLRNSNF YSALNRELGR
KGYNVQLVWS IPLGPRGSSS ISATRTNDNQ WIQQLNYSRS APSNGGLGWN LAYANSTNNN
NQYQQADIVW RTSMMESRMG LYGNSNNYNY WGGLTGSLVV MNRSVYASNM INDAFALVST
NGFSNIPVSY ENQLIGTTNA KGYLLIPTVA SYYQAKFQID PMNLPADVML PNVERRLAIG
ERSGYLINFP IKRISAVNIR ITDASGQDLP KGSAIYTTGN IPISYVGWDG MVYIEQVAQL
NNLRIIRADN GTQCYSQFKL KTTEGIQDAG TTVCR
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