| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1768 |
|---|
| Symbol | |
|---|
| ID | 6088675 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 1963375 |
|---|
| End bp | 1964631 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641596836 |
|---|
| Product | patatin |
|---|
| Protein accession | YP_001720512 |
|---|
| Protein GI | 170024007 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAACGC GTTGGAAATT AATTCGCTCC ATAGCTTTAC TGCTCGGAAT CTCTTTTTTG
GCGGCCTGTA GCCAGCTCCC AAGAAATCCA GTGCCTGTAG CGTTAATGCC TGCCGCTGAG
ATCCCTGGAA TGCCAAATAT TCGCGCTGGG GCAGGGCACA TTAGCGCCGT ATTTGAAGCA
GATTTGCTGC AATCCTATAA AGATGAATCG AAAGAGATGT TTCGTCAGGC TGACGGAACA
CGGGTGTACC CGCATTTAGC CTTGTCCGGT GGTGGGCCAA ATGGCGCATT TGGTGCTGGC
TTTCTAAATG GTTGGACAGA AACAGGTAAA CGTCCGGTTT TCAAAGTTGT TAGTGGGGTT
TCAACGGGGG CCTTGATCGC GCCTTTTGCT TTCTTGGGCA GTGACCACGA TAAAGCCCTG
CATGATTTTT ATACCACCAC AACGACTCGA GATATTTTTC ACATAAATAA TCTGTTGTTT
AGGCTATTTT TCCGTGAATC ATTGGCAGAT ACCAGTCCGC TGTCTCAGTT GATTGATGGC
CATATTACCC CGCAGCTGCT GAGTGAAATT GCTAAGGCTC ATAAAGGCGG GCGTCGGTTG
TATATGGGGA CAGTTGATCT TGACTCACAA CGCTTTATTG TGTGGAACAT GGGGCTTATC
GCATCCAAAG GAACACCAGA AGCCTTGATG CTATTTCGTA AGGTGATGTT GGCATCCTCT
TCTGTGCCCG TCGCATTTTC ACCGGTCTTC TTCGATGTCG TGGCTAATGG TAAACACTAT
GATGAGATGC ACGTGGATGG CGGTGTTGCC GCGCGGGTTT TCTATAATGG TGGGGTATAC
AGCTCGAAAG TGGTACGCGC CAGAGCGGGT TTAGCTGACA GCAAAGAAGA TATTTACATT
ATTCATAACG GTCAACTTGG TCCTCAGCCG GAGCCAACCC CGCGTTTAGT CCGTAATATT
GCTTTGCGGA CCTTGGACTC AACCAGTAAA GCTGCGTTAG TCGGCGATTT ATACCGTATT
TATGCTTTCT CTTTAGCTGA GCAATCGGGA TTTCATTGGA TAACTATCCC ACCTGATGTC
GATATTAATG GCGCGGAAAT CTTTGATCCA GTCAAGATGG AACGCCTGTA TCAGGCGGGT
TATGCCGAAG GATTGCGAGG GCCTGAATGG TCGCTGCGGC CACCGGGTTC TATTGAAATG
GAGGTGCTAT TAAAGGAAGC GGCCACAATA CAGACTAACC AAATGCCAGC GGATTAA
|
|---|
| Protein sequence | MITRWKLIRS IALLLGISFL AACSQLPRNP VPVALMPAAE IPGMPNIRAG AGHISAVFEA
DLLQSYKDES KEMFRQADGT RVYPHLALSG GGPNGAFGAG FLNGWTETGK RPVFKVVSGV
STGALIAPFA FLGSDHDKAL HDFYTTTTTR DIFHINNLLF RLFFRESLAD TSPLSQLIDG
HITPQLLSEI AKAHKGGRRL YMGTVDLDSQ RFIVWNMGLI ASKGTPEALM LFRKVMLASS
SVPVAFSPVF FDVVANGKHY DEMHVDGGVA ARVFYNGGVY SSKVVRARAG LADSKEDIYI
IHNGQLGPQP EPTPRLVRNI ALRTLDSTSK AALVGDLYRI YAFSLAEQSG FHWITIPPDV
DINGAEIFDP VKMERLYQAG YAEGLRGPEW SLRPPGSIEM EVLLKEAATI QTNQMPAD
|
|---|
| |