Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_1761 |
Symbol | |
ID | 6088451 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 1956058 |
End bp | 1958688 |
Gene Length | 2631 bp |
Protein Length | 876 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 641596829 |
Product | YadA domain-containing protein |
Protein accession | YP_001720505 |
Protein GI | 170024000 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport [W] Extracellular structures |
COG ID | [COG5295] Autotransporter adhesin |
TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAGTA TCCAAAAGTG TGACTGTAAT TATCTGGCCA GATTTGCAGT TTCAGATTCC TTTATCAGAG ACAATTCTTT TCGCAGCTTG CTTGCTATTT TTATGGTGAC GATATTTGTG CCAAATACTG CATTTTCTCA ACTCTATGTG AACAATGCCA ATGATCCTGG CTGTTATGTC ATTGCTGATG GGGGGTTTAC GGGTGTTACT AATAGTGATC AAAATTGTTA TACGTTGTCT TTGAATAATA TTAATACCAA TGGGGGGCAG CTATTTGTTG GTGGAAAAGG TGGGATCGCT GGGAAGCCTA GCTTTATCGC CACCCCTTGG ACAGGGACAT TCACGACGGC CGTTGGCACC AGTAATGTCG CCACAGCATA CGGCTTTGTC GTTCAAAACA ATGGTGCATT TATCAACGGT GATACCTACG TGCAGGGGGG GTTATTTTTG AATGGTAGGA AAGCCACCAA TCTTGCCCCC GCAACGATTT CATCGACCTC CACCGATGCG GTGGTTGGTA GCCAGCTTTA TACGGTGATC CAAGATGGAA CCCGCTATTT CCACGCCAAC TCAGTGAACC CGCAAGACTC CGTGCCTGCG GGTCAGGATG CTATTGCTGT CGGGCCGGCG ACGGTGGTCA ATGGTAATAA CGGGATTGGT ATTGGTAATA GCGCCGTTGT TGGGCCGAGT GCTGTCGGGG GCATTGCAAT TGGCCCCAAC ACTCAGGCGA CCGGTACCGC CAGCACGGCC CTTGGTGCCG GAACGCAGGC GCAGGGGGCA CAGTCTTTGG CTCTTGGGGC CGGGGCGGTT ACCCGCCAGG TAAACAGTAT TGCGTTAGGG GCGTCGTCGG TCACCACGGT GGGCGCTCAG GGCAGCTACA GTGCATACGG ACTGCCGACC ACGCAGGCGT CGGTGGGGGA AGTGGGCATA GGGACCGCGC AGGGTAATCG CAAGATCACC GGTGTGGCAG CCGGTTCGGC TGGTTATGAT GCGGTCAACG TGACTCAGTT GACTGCTGTT GGTAATAAAG TCGACCAAAA TACCGCTGAC ATTACCAGTT TAGACGGCCG GGTCACCAAT GTTGAGGGGG GGATGACCAG CATCACCAAC GGGGGCGGTA TAAAGTACTT CCACACTCAC TCCACCGAGC CTGATTCGGT GGCCAGCGGC AGTGATTCGG TGGCGATCGG ACCGAATGCG CAGGCGTCCG GTACCACGTC GATAGCCATG GGGGCCGGGT CGACAGCGCA GGGAGCACAG TCTCTGGCAT TGGGGGCGGG AGCGGCTGCC AGCCAGGCAA ACAGTATTGC GTTAGGGGCG TCATCGGTCA CCACGGTCGG TGCTGAGAGC AACTACAGTG CGTACGGACT GACAGCTTCC CAAACGTCGG TGGGCGAGGT GGGGGTGGGC ACGGCACAGG GGAATCGCAA GATCACCGGT GTGGCAGCCG GTTCGGCTGA TTATGATGCG GTCAATGTCG CGCAATTGAC CGCTGTTGGT GACAAGGTCG ATCAGAATAC CGCTGACATC ACCAGTTTAG ACGGCCGGGT CACCAATGTT GAGGGGGAGA TGACCAGCAT CACCAACGGG GGCGGCGTGA AATACTTCCA CACCCACTCC ACCGAGCCTG ATTCGGTGGC CAGCGGCAGT GATTCGGTGG CGATCGGACC GAATGCGCAG GCGTCAGGTA CGGCTTCGGT GGCCTCCGGC AAGGGTACGC TGGCCTCCGG TAACGGTGCG GTGGCGATAG GTGATGCAGC AAGCGTCAGC GCAGAGGGCA GTGTTGCCCT GGGGCAGGGT TCCGCTGACA ACGGGCGCGG TGCAGAGAGC TACACCGGCA AGTACTCCAC TACGGATAAC ACCACCTCAG GTACGGTGTC GGTGGGCAAT GCGGCAACCG GGGAGACCCG GACGGTCAGC AACGTTGCCG ACGGGCGAGA GGCCATGGAT GCAGTCAATC TGCGGCAACT CGATGGTGCA ATGGCGGCGG TGGGTGACAC CGTATCAGGG TTGCAGAACG GCACTGACGG GATGTTCCAG GTGAACAACA ACAGCGGTCA GGCCAAGCCT TCGGCCACCG GAACTGATGC GATGGCGGGG GGGGCAGGCT CCGTGGCGTC TGGCAGCCAC AGTACCGCGA TGGGTACGGG CAGCAAGGCG ACGGCGGCAA ACAGCACCGC GCTGGGGGCC AACTCAGTGG CGGATCGTGA AAACAGTGTC TCGGTGGGGT CAGTGGGTAA TGAACGGCAG CTCACTAATA TTGCTGTGGG GACTCAGGGC ACTGATGCGG TGAATCTGGA TCAACTCAAC CATAGCATGT CGAATGTCAC CAACGACGCC AATGCTTATA CAGACCAGCG CTATTCTGCA CTTAAAGAAG ATCTGAAAAA ACAGGATAGT ACGTTAAGTG CGGGGATCGC CGGTGCCATG GCGATGGCGA GCCTGACTCA ACCCTATACG CCGGGTGCCA GCATGGCGAC CATTGGTGCG GCCAGCTATC GGGGCCAGTC GGCGCTGTCG GTGGGGGTGT CGAGTATTTC TGACAGTGGG CGATGGGTCA GCAAATTGCA GGCCTCCTCT AATACACAAG GCGATATGGG GGTTGGTGTC GGCGTCGGTT ATCAATGGTA A
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Protein sequence | MKSIQKCDCN YLARFAVSDS FIRDNSFRSL LAIFMVTIFV PNTAFSQLYV NNANDPGCYV IADGGFTGVT NSDQNCYTLS LNNINTNGGQ LFVGGKGGIA GKPSFIATPW TGTFTTAVGT SNVATAYGFV VQNNGAFING DTYVQGGLFL NGRKATNLAP ATISSTSTDA VVGSQLYTVI QDGTRYFHAN SVNPQDSVPA GQDAIAVGPA TVVNGNNGIG IGNSAVVGPS AVGGIAIGPN TQATGTASTA LGAGTQAQGA QSLALGAGAV TRQVNSIALG ASSVTTVGAQ GSYSAYGLPT TQASVGEVGI GTAQGNRKIT GVAAGSAGYD AVNVTQLTAV GNKVDQNTAD ITSLDGRVTN VEGGMTSITN GGGIKYFHTH STEPDSVASG SDSVAIGPNA QASGTTSIAM GAGSTAQGAQ SLALGAGAAA SQANSIALGA SSVTTVGAES NYSAYGLTAS QTSVGEVGVG TAQGNRKITG VAAGSADYDA VNVAQLTAVG DKVDQNTADI TSLDGRVTNV EGEMTSITNG GGVKYFHTHS TEPDSVASGS DSVAIGPNAQ ASGTASVASG KGTLASGNGA VAIGDAASVS AEGSVALGQG SADNGRGAES YTGKYSTTDN TTSGTVSVGN AATGETRTVS NVADGREAMD AVNLRQLDGA MAAVGDTVSG LQNGTDGMFQ VNNNSGQAKP SATGTDAMAG GAGSVASGSH STAMGTGSKA TAANSTALGA NSVADRENSV SVGSVGNERQ LTNIAVGTQG TDAVNLDQLN HSMSNVTNDA NAYTDQRYSA LKEDLKKQDS TLSAGIAGAM AMASLTQPYT PGASMATIGA ASYRGQSALS VGVSSISDSG RWVSKLQASS NTQGDMGVGV GVGYQW
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