Gene YPK_1708 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagYPK_1708 
SymbollolD 
ID6087890 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameYersinia pseudotuberculosis YPIII 
KingdomBacteria 
Replicon accessionNC_010465 
Strand
Start bp1896167 
End bp1896871 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content50% 
IMG OID641596778 
Productlipoprotein transporter ATP-binding subunit 
Protein accessionYP_001720454 
Protein GI170023949 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID[TIGR02211] lipoprotein releasing system, ATP-binding protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000319183 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTAATC ATCCTTTATT ACAATGTATA AACCTGTGCA AGCGTTATCA GGAAGGCCAA 
CTGCATACTG ATGTCCTGCG CAATGTCTCT TTCGCTATCG AGCCTGGTGA ACTGATGGCG
ATTGTCGGCA GTTCAGGTTC AGGTAAAAGC ACGCTGTTGC ATTTGCTGGG GGGGCTGGAT
TCACCCACCT CTGGTGAGGT TATTTATCAG GGGCGTTCGC TTAACCAACT CTCTTCTACC
GCGAAAGCTG AATTGCGTAA TCGGGAGTTA GGTTTTATCT ATCAATTTCA TCATTTGTTG
CCCGATTTTA CCGCGTTAGA AAATGTCGCC ATGCCATTAC TCATCGGCGG CAGTAAACCC
GCTGAAGCGC AAGAGAAAGC CCATGAGATG CTGGCGGCGG TGGGGTTGGC GAAGCGCAGT
AAACATCGTC CATCGGAGTT ATCAGGGGGA GAGCGCCAAC GGGTCGCTAT CGCCCGTTCT
TTGGTAAATA ACCCATCGCT GGTATTGGCA GATGAACCTA CCGGTAATCT GGACCAACGC
AATGCCGACA GTATTTTTAA TCTGTTAGGT GAATTGAATG TTCGTCAGGG GACCGCGTTT
CTGGTGGTGA CTCACGATTT ACAATTAGCG AAACGGATGA GCCGTCAACT TGAAATGCGA
GATGGTCAGC TACAACACCA TTTGACGCTG GTGGGGGCCG AGTGA
 
Protein sequence
MSNHPLLQCI NLCKRYQEGQ LHTDVLRNVS FAIEPGELMA IVGSSGSGKS TLLHLLGGLD 
SPTSGEVIYQ GRSLNQLSST AKAELRNREL GFIYQFHHLL PDFTALENVA MPLLIGGSKP
AEAQEKAHEM LAAVGLAKRS KHRPSELSGG ERQRVAIARS LVNNPSLVLA DEPTGNLDQR
NADSIFNLLG ELNVRQGTAF LVVTHDLQLA KRMSRQLEMR DGQLQHHLTL VGAE