Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_1708 |
Symbol | lolD |
ID | 6087890 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 1896167 |
End bp | 1896871 |
Gene Length | 705 bp |
Protein Length | 234 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 641596778 |
Product | lipoprotein transporter ATP-binding subunit |
Protein accession | YP_001720454 |
Protein GI | 170023949 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | [TIGR02211] lipoprotein releasing system, ATP-binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0000319183 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAATC ATCCTTTATT ACAATGTATA AACCTGTGCA AGCGTTATCA GGAAGGCCAA CTGCATACTG ATGTCCTGCG CAATGTCTCT TTCGCTATCG AGCCTGGTGA ACTGATGGCG ATTGTCGGCA GTTCAGGTTC AGGTAAAAGC ACGCTGTTGC ATTTGCTGGG GGGGCTGGAT TCACCCACCT CTGGTGAGGT TATTTATCAG GGGCGTTCGC TTAACCAACT CTCTTCTACC GCGAAAGCTG AATTGCGTAA TCGGGAGTTA GGTTTTATCT ATCAATTTCA TCATTTGTTG CCCGATTTTA CCGCGTTAGA AAATGTCGCC ATGCCATTAC TCATCGGCGG CAGTAAACCC GCTGAAGCGC AAGAGAAAGC CCATGAGATG CTGGCGGCGG TGGGGTTGGC GAAGCGCAGT AAACATCGTC CATCGGAGTT ATCAGGGGGA GAGCGCCAAC GGGTCGCTAT CGCCCGTTCT TTGGTAAATA ACCCATCGCT GGTATTGGCA GATGAACCTA CCGGTAATCT GGACCAACGC AATGCCGACA GTATTTTTAA TCTGTTAGGT GAATTGAATG TTCGTCAGGG GACCGCGTTT CTGGTGGTGA CTCACGATTT ACAATTAGCG AAACGGATGA GCCGTCAACT TGAAATGCGA GATGGTCAGC TACAACACCA TTTGACGCTG GTGGGGGCCG AGTGA
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Protein sequence | MSNHPLLQCI NLCKRYQEGQ LHTDVLRNVS FAIEPGELMA IVGSSGSGKS TLLHLLGGLD SPTSGEVIYQ GRSLNQLSST AKAELRNREL GFIYQFHHLL PDFTALENVA MPLLIGGSKP AEAQEKAHEM LAAVGLAKRS KHRPSELSGG ERQRVAIARS LVNNPSLVLA DEPTGNLDQR NADSIFNLLG ELNVRQGTAF LVVTHDLQLA KRMSRQLEMR DGQLQHHLTL VGAE
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