Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_1695 |
Symbol | |
ID | 6089439 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 1881829 |
End bp | 1882647 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641596765 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_001720441 |
Protein GI | 170023936 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACCCGGT ACTTAAACAA AGATACGACA GTGTGTATTT CCCTCGCGGC CAGGCCCAGC AATTTTGGTA CCCGTTTTCA TAACTTTTTG TATGATGCTT TAGATCTCGA TTATTTGTAT AAAGCTTTTA CCACCAACGA CTTGGCTGCG GCTATTGGTG GTGTGCGAGC GTTGGGTTTC CGTGGCTGCG CGATCTCAAT GCCGTTTAAA GAGGCTGTTA TTCCAATGGT AGATGAGATG GATCCCTCGG CCAAAGCGAT CAACTCAGTG AATACACTGG TTAATACTGG CGGTTATCTG AAAGCATACA ATACCGACTA TATTGCCATT GCCAAATTGT TACAGGAGTA TCAGGTCCCG GTAGATAACG TGTTTGCCTT GCGGGGCAGT GGCGGTATGG CGAAAGCCGT TGCTTTTGCG CTGAAAAATG CTGGCTTCAA ACAGGGTTAT ATTATCGCCA CCAATGAAAA GACCGGCAAG CAACTTGCAG AGCAATCTGG TTACATCTAT CGCCCTGATA TGCAGAATAT TCAGGCTGAT ATGCTCATTA ATGCGACACC AGTCGGCATG GCTGGGGGGG CTGATGCTGA TAAATTGGCT TTTACTGAAA CTGAAGTGGA CCGCGCGAAA ATTGTTTTTG ATGTTGTGGC GTTGCCCGCC GTCACCCCGC TTATCCGCTA TGCTCAGACT CAGGGAAAAA CAGTGATCAC CGGTGCCGAG GTTTTTGCTA TTCAGGCTGT AGAGCAATTT GTGTTATACA CCGGTATCCG CCCAAGTCAG GCGCTGTTTG AACAAGCCGC AGCTTATGCA AGAGGCTGA
|
Protein sequence | MTRYLNKDTT VCISLAARPS NFGTRFHNFL YDALDLDYLY KAFTTNDLAA AIGGVRALGF RGCAISMPFK EAVIPMVDEM DPSAKAINSV NTLVNTGGYL KAYNTDYIAI AKLLQEYQVP VDNVFALRGS GGMAKAVAFA LKNAGFKQGY IIATNEKTGK QLAEQSGYIY RPDMQNIQAD MLINATPVGM AGGADADKLA FTETEVDRAK IVFDVVALPA VTPLIRYAQT QGKTVITGAE VFAIQAVEQF VLYTGIRPSQ ALFEQAAAYA RG
|
| |