| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1677 |
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| Symbol | rne |
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| ID | 6089510 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 1861843 |
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| End bp | 1865493 |
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| Gene Length | 3651 bp |
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| Protein Length | 1216 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641596747 |
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| Product | ribonuclease E |
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| Protein accession | YP_001720423 |
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| Protein GI | 170023918 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000377607 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGAA TGTTGATTAA CGCGACTCAG CAAGAAGAGT TGCGTGTTGC CCTTGTAGAT
GGACAGCGAC TGTATGATCT GGATATTGAA AGCCCAGGCC ATGAACAGAA AAAAGCGAAT
ATTTATAAAG GTAAAATCAC CCGAATCGAA CCTAGTCTGG AAGCCGCTTT TGTTGATTAT
GGCGCGGAAC GACATGGTTT CCTTCCATTA AAAGAAATCT CTCGCGAGTA CTTCCCCAAT
AATTACTCTT CCCATGGCCG CCCAAACATC AAAGATGTCT TGCGTGAAGG CCAGGAAGTT
ATTGTTCAGG TTGATAAAGA AGAACGCGGC AATAAAGGTG CTGCATTAAC CACTTTCATT
AGTCTGGCTG GCAGCTATTT GGTTCTGATG CCAAACAACC CACGTGCGGG CGGTATTTCT
CGCCGCATCG AAGGTGATGA CCGCACCGAG CTGAAAGAAG CCCTATCTTC CCTGCAATTA
CCTGATGGCA TGGGTCTGAT TGTTCGTACT GCGGGTGTGG GCAAATCTGC TGACGCACTG
CAATGGGATT TGTCATTCCG CCTGAAGCAC TGGGATGCGA TTAAAAAAGC GGCTGAAGGT
CGCCCCGCGC CCTTCTTAAT CCATCAGGAA AGTAACGTGA TCGTCCGTGC TTTTCGCGAT
TACCTGCGCC CAGACATCGG CGAAATCCTG ATTGATAATC CGAAGGTTCT CGAACTGGCA
AAAGAGCATA TTGCTGCCCT TGGTCGCCCG GATTTCAGCA GCAAAATAAA ATTGTATAGC
GGTGAAATTC CGTTATTCAG TCATTACCAA ATTGAGTCGC AGATCGAATC TGCCTTCCAA
CGTGAAGTGC GTTTGCCTTC TGGTGGCTCT ATCGTTATTG ACACGACCGA AGCACTGACG
GCGATTGATA TCAACTCAGC CCGAGCCACG CGTGGTGGTG ATATCGAAGA GACCGCGTTT
AATACCAACC TTGAAGCCGC TGACGAAATT GCTCGCCAAT TACGTTTACG TGACCTTGGT
GGTCTGATCG TTATCGACTT CATTGATATG ACCCCGGTAC GCCATCAACG TGAAGTTGAA
AACCGTTTAC GCGATGCTGT CCGTCAGGAC CGTGCCCGTA TCCAGATTGG TCGTATCTCA
CGCTTTGGTT TGCTGGAAAT GTCCCGTCAG CGCCTCAGCC CATCGCTGGG TGAATCCAGT
CACCACGTCT GCCCACGCTG TAGCGGTACC GGCACCGTAC GTGACAATGA ATCGCTGTCA
CTTTCTATTC TGCGTTTGAT TGAAGAAGAA GCGCTGAAAG AGAATACCCA TGAAGTTCAC
GCCATCGTAC CGGTACAAAT CGCATCGTAC CTGTTGAACG AAAAACGTGA ATCAGTAAAC
GCTATTGAGA AGCGTCAAGG TGGTGTCCGT GCCGTGATCG TGCCAAACGA TCAGATGCAA
ACACCGCACT ACTCTGTCCT GCGCGTACGC AAAGGCGAAG AAGTCCCGTC TCTCAGCTAT
CTATTGCCAC AACTGCACGA AGCAGAAATG GCGCAACCGC TGGAAGAGGC CACCATTGAA
CGTAAGCGCC CGGAACAACC AGCATTGGCT ACCTTCTCTC TGCCAACAGA AGTGCCACCA
GAGGAGGCCC CTACCGTAGC CAAGGCTAAA CCTGCGGTTG CAACACCCGC CGCGGTTAGT
ACTGACGTAG AACAACCTGG CTTCTTTAGC CGTTTGTTCA GTGGCTTAAA AAATATGTTT
GGTGCTTCCG CTGAAGCAGA AGTGCAACCC GCTGAAGTTG TAAAAACCGA CGCTAGCGAA
AATCGCCGTA ATGATCGCCG CAATCCTCGC CGCCAGAATA ATGGCCGTAA AGAGCGCAAT
GATCGTACTC CACGCGAAGG TCGTGATAAT TCCAGCCGCG ATAACACCAA CCGTGATAAC
ACCAGTCGTG ATAACGCTAA CCGCGATGGC GCTAATCGTG ATAATTCCAA TCGCGACAAC
AGTGGCCGCG ATAACGTTAG TCGTGAAGGC CGCGAAGATC AACGCCGCAA CAACAGACGT
CCGGCCCAGC CAACGACAAC ATCGCAAGGG CAAACTGAGG TTGTTGAAGC CGATAAAGCG
CAACGTGAAG AACAACCACA GCGCCGTGGT GACCGTCAGC GTCGTCGTCA GGATGAGAAG
CGTCAGGCAC CACAAGAAAT CAAAGCAGAT GTTGCGGAAG CCCCTGTTAT AGAAGAGGTA
CAACCTGAGC AAGAAGAACG CCAACAGGTT ATGCAACGTC GTCAGCGTCG CCAGTTGAAT
CAGAAAGTCC GTATTCAATC GGCAAATGAT GAGCTGAATA CGTTGGAATC TCCTGTCAGT
GCACCTGTCG CGCAGGTGGT GGTGGCTGAA GTACAAGAAG AAGTGAAGTT ACTGCCACAA
ATTACTGCTC AAACTGATGA TGACAGTGCT AATGAACGTA CTACCAATAA TGAAAATGGT
ATGCCACGTC GTTCCCGTCG TTCACCACGC CATCTGCGTG TTAGTGGTCA ACGCCGTCGC
CGTTATCGTG ATGAACGTTA CCCGGCACAA TCGGCCATGC CTCTGGCAGG GGCTTTTGCC
TCACCAGAAA TGGCATCCGG TAAAGTGTGG GTTCGTTATC CAGTGACGCC AGTCGTTGAA
CAGGTTGTCG TTGAACAAAT CGCCATTGAA CAAACTACAA CCGTTGAGCA AACAGCCATC
GTCGAGCAGG TCAGTGTAGC GAATATTGTC ACTGCGCAAT TGCCTGTAGA GCAGGTGCAA
AACACCGTTG CAGAACAAGA ATCGAGTGCA ACTCCATCTG TTATGACAAC ACCAACCGTT
GCGGTAACAC TGGCCCCACA ACACAAACCG GGGGGTTCTT CATCTTCGGC TGCTGCGGTT
CCAGGCCGTG CACCTATCGT TGCTGCAGTG CCTGTCGTTG CTGAAACGAC TGCTGCTGAA
ACGGTTGTTG CTAAAACTGA AGCCGCTATT GATGCGGTGG CTGTTGTGGA ACCGATGGCT
GCTGTGGAAT CGATAGCTGC TGTGGAAACT GCAACTGTAG AACCGGTTGT TACAGAAGAA
CCGAATGTCA CAGAACCGGC CGTTGCCGAG CCAGCGATTG AAACTGATCC TGTCGAAGAA
ACAACATCAG TTGTAGAGAT TGCTCCAACC GTTGAATCAA CGCCTATGAT CGAAGATACG
GCTGTTGTAG TCGCTGCGAC GGTGGTTGAC ACTACACCAG AAACTGCGTC AACCGTGCAA
GATGATATTG TTGAAGAGAC AGTAGTTGGA GAGACAGCAG TTGAAGCGGT AAATATCTCT
GAAACTGTGG CTGAAGAGAC CGCAATAACG GAACCTGCTG CTGAAGCCAT TGCTACTCAG
CAAACCACTA TTGCGCAGGA GACCATTGCT GAACCAACGG TTGAAACCGC TATTGATGTG
GTTGCGGTAG TCAAACAACC CGCGGTTGCG CATCCGGAAG GGGTGGTGTT CAAACACTTC
GCTTCAGCGC CAATGACCAA AGCGCCAGCA CCTGATTACG CCCCTGAATC ACCGACCAAA
GGTCACTGGG AGCGTCCAAC CTTTGATTTC TCAGGCAAAG GTTCTGCTGG GGGTCATGCC
GCGGCTACCC AGGCAACTGC ACCCGCGACC AAACCGCAAT CTGTTGAGTA A
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| Protein sequence | MKRMLINATQ QEELRVALVD GQRLYDLDIE SPGHEQKKAN IYKGKITRIE PSLEAAFVDY
GAERHGFLPL KEISREYFPN NYSSHGRPNI KDVLREGQEV IVQVDKEERG NKGAALTTFI
SLAGSYLVLM PNNPRAGGIS RRIEGDDRTE LKEALSSLQL PDGMGLIVRT AGVGKSADAL
QWDLSFRLKH WDAIKKAAEG RPAPFLIHQE SNVIVRAFRD YLRPDIGEIL IDNPKVLELA
KEHIAALGRP DFSSKIKLYS GEIPLFSHYQ IESQIESAFQ REVRLPSGGS IVIDTTEALT
AIDINSARAT RGGDIEETAF NTNLEAADEI ARQLRLRDLG GLIVIDFIDM TPVRHQREVE
NRLRDAVRQD RARIQIGRIS RFGLLEMSRQ RLSPSLGESS HHVCPRCSGT GTVRDNESLS
LSILRLIEEE ALKENTHEVH AIVPVQIASY LLNEKRESVN AIEKRQGGVR AVIVPNDQMQ
TPHYSVLRVR KGEEVPSLSY LLPQLHEAEM AQPLEEATIE RKRPEQPALA TFSLPTEVPP
EEAPTVAKAK PAVATPAAVS TDVEQPGFFS RLFSGLKNMF GASAEAEVQP AEVVKTDASE
NRRNDRRNPR RQNNGRKERN DRTPREGRDN SSRDNTNRDN TSRDNANRDG ANRDNSNRDN
SGRDNVSREG REDQRRNNRR PAQPTTTSQG QTEVVEADKA QREEQPQRRG DRQRRRQDEK
RQAPQEIKAD VAEAPVIEEV QPEQEERQQV MQRRQRRQLN QKVRIQSAND ELNTLESPVS
APVAQVVVAE VQEEVKLLPQ ITAQTDDDSA NERTTNNENG MPRRSRRSPR HLRVSGQRRR
RYRDERYPAQ SAMPLAGAFA SPEMASGKVW VRYPVTPVVE QVVVEQIAIE QTTTVEQTAI
VEQVSVANIV TAQLPVEQVQ NTVAEQESSA TPSVMTTPTV AVTLAPQHKP GGSSSSAAAV
PGRAPIVAAV PVVAETTAAE TVVAKTEAAI DAVAVVEPMA AVESIAAVET ATVEPVVTEE
PNVTEPAVAE PAIETDPVEE TTSVVEIAPT VESTPMIEDT AVVVAATVVD TTPETASTVQ
DDIVEETVVG ETAVEAVNIS ETVAEETAIT EPAAEAIATQ QTTIAQETIA EPTVETAIDV
VAVVKQPAVA HPEGVVFKHF ASAPMTKAPA PDYAPESPTK GHWERPTFDF SGKGSAGGHA
AATQATAPAT KPQSVE
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