| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1645 |
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| Symbol | |
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| ID | 6089857 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 1825475 |
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| End bp | 1828762 |
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| Gene Length | 3288 bp |
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| Protein Length | 1095 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641596715 |
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| Product | CRISPR-associated helicase Cas3 family protein |
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| Protein accession | YP_001720391 |
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| Protein GI | 170023886 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1203] Predicted helicases |
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| TIGRFAM ID | [TIGR02562] CRISPR-associated helicase Cas3 |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.103556 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATATTT TACTGATATC CCAATGCCAT AAACGGGCGC TTGATGAAAC ACGCCGTATT
TTGGATCAGT TTGCTGAACG TAAAGGTGAT CGGACATGGC AGACGGCAAT AACGCAGGAA
GGGCTAAATA CATTACGTAA ATTATTGCGT AGAACGGCGC GGCGTAATAG TGCGGTGGCC
TGCCATTGGA TCAAAAGTAA TAACCAAAGC GAGTTGCTAT GGATTGTTGG GAATTTAAGG
CGTTTCAATG CTGAGGGAAC CGTGCCAACC AATACTACGC AACGGGATAT CTTGCGCAGC
CAGGATGAAA ATAACTGGCA CAGCGTGGAG ACCATTGCAC TGCTGGCCGG TATCGCTGGG
TTATTTCATG ATTTTGGTAA GGCCAATGTA CTATTTCAAC AAGGGTTGCA AGGGCAGGGG
AAAACATATC AACCCTATCG GCATGAGTGG GTTTCATTAC GTTTATTTCA AGCTTTTGTT
GAACAGAAAA ATGATATTCA ATGGCTCACA GCCTTAAGCC AAATTAATCC CGCTGACGAA
ACCGCTTTAA TGTCCAATTT GGTTAAAGAT GGGCTAGACG ACTATACCAA TCCCCTCGCT
GCATTACCTC CTCTTGCCAA GACTATCGCG TGGTTGATCC TTTCACACCA TCGCTTACCC
GTGTATCCCT CCAAGGATTA CCATAGACCA CCTAAAGTAG AGGAAATCGA TGATTGGTTG
CACCAGCAGC TTATGCCGGT ATGGAATTCG ACCAATATGG ACAGCGGTGA CTGGCGTGAA
AAAGATAAGC TGGATGTATG GCGCTTCCCG CATGGCACGC CACTACAAAG TGCCGAATGG
TGTAAAAAGG CACAAAAGTT TGCCAAACGC GCTTTGCGAC AACCGTCATT GGTTAATGAT
GGTCACTTGA ACCAGCGTTT TACCAGCCAT ATGGCGCGTC TGGTGTTAAT GCTGGCCGAT
CATCATTATT CTTCATTACC GGCCACTCCC GGTTGGCAGG ATAAAAACTA TCAAGTATTT
GCAAATACCC ACAATAAAAT GAGGGATGCG AATGCCCACA GTAAAACGAT TGAAATGAAG
CAGCGGCTGG ATGAACATAA TATTGGTGTG GGGCAGAACG CACTGTTGCT TGGCCGCAGC
TTGCCACATA TCCGCAAAAC CTTACCAGCA ATCACTCGCC ATAAAGGATT TAAACAACGT
TCGGTTCAGG AAAAGTATCG TTGGCAAGAT AAAGCCTTTG ATCTGGCTGT CACGCTGCGC
GAGCGTTCTC TGCAGCAAGG TTTTTTCGGC GTCAATATGG CCTCAACCGG GTGCGGTAAA
ACCTTTGCAA ATGCCCGGAT AATGTATGGT TTGTCCGATG AAAAACAGGG ATGCCGCTTT
TCTGTTGCTT TGGGCCTACG CACCTTAACC TTGCAGACCG GTACCGCATT GCAGCAGAAG
TTAACCTTAC AAAAGGACGA TTTGGCCGTC TTGATTGGTT CTCAATCGGT CTTGCAATTA
TATCAATTAA ATAACGATAA ATTGGAACCT CGTGGAACCG GCAGTCAGTC GGCGGATAAG
TTTTTTTCTG AGCATCAGTA TGTCAGTTAT GACGGCAGTT TGGATGATGG GCGGCTGAGC
ACTTGGTTAA GTAATAACGA TAGATTAAAG CGTTTGCTCT GTGCGCCAGT ACTGGTCTGC
ACCATTGACC ACCTGATCCC TGCCACCGAG AGCCTACGGG GTGGCAAGCA GATAGCCCCA
ATGCTGCGTT TGCTAACCTC CGATTTAGTA TTGGATGAAC CGGATGATTT TGATCGCAAT
GACTTGCCCG CGCTATGCCG CTTGGTGAAT TGGGCGGGCA TGTTAGGTTC CCGCGTTCTG
CTTTCGTCAG CCACATTGCC GCCAGCATTA GTACAAGCGT TGTTCAATGC TTATCGTGCG
GGGCGGGCTG ATTATCAACA AGCCAGCGGG CAACCGGATA CGCCGGTTAA TATTTGCTGT
GCCTGGTTTG ATGAACATGG CGTTGCACAG CAAGATATCC AGCAGTCAAA AGATTTTATC
CAACATCATG GCGATTTTAT CACTCGCCGA GTGGGGAAAC TGTCTACGGC AGAGGTGCTG
CGCAGAGCCG AGTTAATTCC GGTCAGCTCT GCCAGTGTGA AGAATGGCTC GGTGCTAGAT
GCTATGGCGG CGGTGATGCG CGATTCTATG CTGCGCTTAC ATCAGGCACA TCATCAAACT
CACCCTTCTG AGAAAACCGT TTCAGTGGGT GTGGTCAGGA TGGCCAATAT TGATCCGCTG
GTGGCGATTG CCCAGCGCTT ATACGCGATG GCCGCGCCAG AAAATTACCG TATTCATTAC
TGTGTCTATC ATAGTCAGCA TCCGCTAGCG GTGCGTTCTG CTATTGAACG GCGGTTGGAT
GTGACGTTAA CTCGCTATCA GCCTAATGCA CTTTGGCAGG TAGCCGAAAT TGAACATGCA
CTACAGCACC ATCCGGAGCA GCATCACCTG TTTGTGGTGC TCGCCACCTC GGTGGTTGAA
GTGGGCAGGG ACCATGACTA CGATTGGGCG CTAGCCGAAC CCAGCTCTAT GCGCTCGTTT
ATCCAGTTGG CAGGGCGTGT ACAACGGCAC CGGCAAGTCG CGCCGCAGAT GGCGAATATG
CATATTCTGC AAAAGAATTT TAAGGCACTG ACTCAAAAAG ATCCGGCGAT CCCCGTTTAT
TGCAAACCCG GTTTTGAGAC CACCCGTTGT CGGCTGAACA CCCATGATCT GGATAAGCTG
CTCTTACCCT CACAATATAA AGTGATTAAT GCCATCAGCC GTATTCAAGA AAGAACCAAA
CTCGAACCTC GAGATAATTT TGTTGATTTA GAACATCTTA GCTTGAGGTT GATATTGCAG
GGTAGCGCTG AACCGTTGAA GTATTATGCC GCATTATGGT GGCGTAAACA GGCGACCTGG
AGTGGGGAGC AGCAACGGTG CACCCCTTTC CGACAATCCA GCCCTGATGA ACAGCATAAT
CTGTGGATTG ACGATGAAGC GGATAAACCG GTGTTTAAAC GTCTTGATAG CGACCAGATT
GAGTGGAAAG TCAGTGACGG GTTTCAGGAC GTTGAACTGA CACTGGCAGT AGGAAACAGT
GCATGGATAG ACACCGATTG TCTGCGGATT TATCAGTGGC TGGCAGAGTC ATTAAATAAG
GAATTAAACG AGGTTAGCCG GCAATTTGGT GAGGTCCGCC TGCCCAAAAA AGATGGCGAG
AGGTGGCATT ATCATCCGCT ATTAGGGGGG TTTGGCGCAC TCGATTGA
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| Protein sequence | MNILLISQCH KRALDETRRI LDQFAERKGD RTWQTAITQE GLNTLRKLLR RTARRNSAVA
CHWIKSNNQS ELLWIVGNLR RFNAEGTVPT NTTQRDILRS QDENNWHSVE TIALLAGIAG
LFHDFGKANV LFQQGLQGQG KTYQPYRHEW VSLRLFQAFV EQKNDIQWLT ALSQINPADE
TALMSNLVKD GLDDYTNPLA ALPPLAKTIA WLILSHHRLP VYPSKDYHRP PKVEEIDDWL
HQQLMPVWNS TNMDSGDWRE KDKLDVWRFP HGTPLQSAEW CKKAQKFAKR ALRQPSLVND
GHLNQRFTSH MARLVLMLAD HHYSSLPATP GWQDKNYQVF ANTHNKMRDA NAHSKTIEMK
QRLDEHNIGV GQNALLLGRS LPHIRKTLPA ITRHKGFKQR SVQEKYRWQD KAFDLAVTLR
ERSLQQGFFG VNMASTGCGK TFANARIMYG LSDEKQGCRF SVALGLRTLT LQTGTALQQK
LTLQKDDLAV LIGSQSVLQL YQLNNDKLEP RGTGSQSADK FFSEHQYVSY DGSLDDGRLS
TWLSNNDRLK RLLCAPVLVC TIDHLIPATE SLRGGKQIAP MLRLLTSDLV LDEPDDFDRN
DLPALCRLVN WAGMLGSRVL LSSATLPPAL VQALFNAYRA GRADYQQASG QPDTPVNICC
AWFDEHGVAQ QDIQQSKDFI QHHGDFITRR VGKLSTAEVL RRAELIPVSS ASVKNGSVLD
AMAAVMRDSM LRLHQAHHQT HPSEKTVSVG VVRMANIDPL VAIAQRLYAM AAPENYRIHY
CVYHSQHPLA VRSAIERRLD VTLTRYQPNA LWQVAEIEHA LQHHPEQHHL FVVLATSVVE
VGRDHDYDWA LAEPSSMRSF IQLAGRVQRH RQVAPQMANM HILQKNFKAL TQKDPAIPVY
CKPGFETTRC RLNTHDLDKL LLPSQYKVIN AISRIQERTK LEPRDNFVDL EHLSLRLILQ
GSAEPLKYYA ALWWRKQATW SGEQQRCTPF RQSSPDEQHN LWIDDEADKP VFKRLDSDQI
EWKVSDGFQD VELTLAVGNS AWIDTDCLRI YQWLAESLNK ELNEVSRQFG EVRLPKKDGE
RWHYHPLLGG FGALD
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