| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1618 |
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| Symbol | |
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| ID | 6088536 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 1788976 |
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| End bp | 1790622 |
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| Gene Length | 1647 bp |
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| Protein Length | 548 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641596688 |
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| Product | putative transporter |
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| Protein accession | YP_001720364 |
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| Protein GI | 170023859 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGAACA ACCCGAGAAA AGATATACCG CTGATTGTCA CCAGTTTGCT CTGCATCATT
CTGATTGCTT TGGCATTCAG CTTATTTCCG CAGCAAAGCA GCCAAATGGC AGAGACCATT
TTTAGTGGCG TTACCCGGCT ACTGGGATCG ACGATCCAAA TATTAGTGCT GCTTGGCTTA
ATATTGGTAC TTTATATCGC GGTGAGCAAA TACGGCAATA TTCGTCTGGG TGAGGGAAAG
CCTGAGTATC GTACTATCCC ATGGTTGTTT ATGTTTATTT GCGCGGGACT TGGTTCATCA
ACCCTGTATT GGGGGGTGAT GGAGTGGGCT TATTACTATC AGACACCGGG TCTGAATATT
GCGCCAAAAA CGCCGAAGGC ACTGGAATAC AGCGTCAGTT ACTCCTTCTT TCATTGGGGG
ATCAGTGCGT GGGCAACTTA TGCGTTGGCC TCGCTGATTA TGGCTTACCA TTTTCATGTC
AGAAAAAACA AAGGGTTAAG TTTATCGGGG ATTATCTCGG CCATTACCGG GGTCAACCCG
CAGGGTTTTT GGGGGCGTCT GGTCGATCTG ATCTTTTTAA TCGCGACAAT AGGGGCGCTG
ACGATCTCAT TAGTGATCAC CGCCGCCACA TTTACCCGTG GACTGACTGC GCTTATCGGC
GTGCCTAATA ACTTTGCGGT GCAGGCTGGC GTGATGTTGG TAGCGGCAGT TATCTTTTCC
TTTAGTTCGT ATATCGGTAT TGATCATGGT ATGCAGCGCC TGAGCAAAAT GGTGGGATGG
GGCGCTTTTG GTTTTGCCGT TCTGGTGCTT TTAGTGGGGC CAACTGAATT CATTATCAAT
AACACCATTA ACTCCATCGG ATTAACCACA CAAAATTTCC TGCAAATGAG CCTGTTCACC
GACCCTATGG GGGATGGCCG CTTTACCCGC AGTTGGACGG TCTTTTATTG GTTATGGTGG
ATTTCATATA CCCCCGGTGT TGCGATGTTT GTGACGCGGG TTTCACGTGG TCGCAAACTC
AAAGAGGTTA TATGGGCTTT GCTGCTGGGC AGTTCGTTGG GTTGCTGGTT CTTCTTTGGG
GTACTGGAAA GCTACGCGAT ACAACAGTTT ATTAGTGGTG CGTTAGATGT TCCCCTCATC
CTAAATACTC AGGGCGGGGA AACTGCGGTA CAAATGCTGC TCAGCGCGCT ACCCATGGGC
AAATTATTCC TTGCTGCCTA TCTGTTCATC ATGATTATTT TCCTGGCTTC ACATATGGAT
GCGGTGGCGT ACTGTATGGC GGCAACCAGC ACCCGTAATC TGCGGGAAGG CGAAGATCCT
AATCGTATGC TGCGGCTGTT TTGGTGTGTA GTGATTACAC TGATCCCTCT CTCTATTCTG
TTTGCTGGTG CCTCGTTGGA TACCATGAAA ACGACGGTTG TGCTCACTGC GCTGCCTTTT
TTATTGATTC TCTTGATCGA GGTTTATGGC TTTATCCGCT GGATTAAGCA GGATTATGCC
CATGTTCCCG CGCACCTTAT TGAGCAAAGT ACCCCGCAAG TCATGTTGCC GGCTGAATCT
TTACCGCCTG CTACTGCGTC AATGTTAGTC GTGGAAACTT TAGTCGTGGA AACTGCGGCG
CCACCCGCCA GTAAGCATAA CCAGTAA
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| Protein sequence | MLNNPRKDIP LIVTSLLCII LIALAFSLFP QQSSQMAETI FSGVTRLLGS TIQILVLLGL
ILVLYIAVSK YGNIRLGEGK PEYRTIPWLF MFICAGLGSS TLYWGVMEWA YYYQTPGLNI
APKTPKALEY SVSYSFFHWG ISAWATYALA SLIMAYHFHV RKNKGLSLSG IISAITGVNP
QGFWGRLVDL IFLIATIGAL TISLVITAAT FTRGLTALIG VPNNFAVQAG VMLVAAVIFS
FSSYIGIDHG MQRLSKMVGW GAFGFAVLVL LVGPTEFIIN NTINSIGLTT QNFLQMSLFT
DPMGDGRFTR SWTVFYWLWW ISYTPGVAMF VTRVSRGRKL KEVIWALLLG SSLGCWFFFG
VLESYAIQQF ISGALDVPLI LNTQGGETAV QMLLSALPMG KLFLAAYLFI MIIFLASHMD
AVAYCMAATS TRNLREGEDP NRMLRLFWCV VITLIPLSIL FAGASLDTMK TTVVLTALPF
LLILLIEVYG FIRWIKQDYA HVPAHLIEQS TPQVMLPAES LPPATASMLV VETLVVETAA
PPASKHNQ
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