| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1605 |
|---|
| Symbol | |
|---|
| ID | 6088609 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | - |
|---|
| Start bp | 1774473 |
|---|
| End bp | 1775360 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641596675 |
|---|
| Product | threonine and homoserine efflux system |
|---|
| Protein accession | YP_001720351 |
|---|
| Protein GI | 170023846 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5006] Predicted permease, DMT superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.140132 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTGT CTCCTTCTTC TAAAAACTCA CTGCCATTAC TCCCCATTTT GTTGCTCGTG
ATCGCCATGA TCTCAATACA AAGTGGTGCA TCACTGGCAA AAAGCTTATT CCCACTGGTC
GGTGCACAAG GTATTACCTC GCTGCGGCTC GGCATCGGTA CACTTATTCT GTTTGTTATT
TTTAAACCTT GGCGGATGCG GTTTGCTGCA GGCAGCCGTT TACCCCTATT AATTTATGGG
GTGGCATTAG GTGGGATGAA CTTCTTGTTC TACATGTCGT TAAAAACGGT GCCATTAGGC
ATCGCTGTAG CACTGGAATT CACAGGGCCT CTGGCCGTCG CTATGTTTTC TTCCCGGCGT
GCGGTAGATT TTATCTGGGT GGGGCTCGCC ATTCTGGGGT TATGGTTCCT GTTACCACTG
GGGCATAACA TTGGCACCAT TGATTTATTT GGTGCAGCCT GTGCTTTAGG TGCAGGGGCC
TGCTGGGCAA TCTATATCAT TTCGGGTCAA AAGGCCGGAG GTGACCATGG CCCAGCGACT
GTCGCGGTCG GCTCGTTGAT TGCGGCCTTG ATTTTCTGCC CAATTGGGGT GGCCTATAAC
GGCATGGCAC TGTTCGATCC GGCGATCTTG CCCATTGCAC TGGCCGTCGC CATTTTGTCT
ACTGCATTAC CTTACTCACT CGAGATGGTC GCGTTAACTC GCCTTCCTGC CCGGACATTT
GGCACATTAA TGAGTCTGGA ACCTGCATTA GCCGCAATTT CAGGTCTGGT GTTCTTAAAT
GAGCATCTGA CCTTGGTGCA ATGGCTCGCG TTAGCATCAA TTATCAGTGC CTCCGTTGGT
GCCAGCCTGA CCATAAAACC TAAACCACAA CTTGACCAGG TCACCTGA
|
|---|
| Protein sequence | MSLSPSSKNS LPLLPILLLV IAMISIQSGA SLAKSLFPLV GAQGITSLRL GIGTLILFVI
FKPWRMRFAA GSRLPLLIYG VALGGMNFLF YMSLKTVPLG IAVALEFTGP LAVAMFSSRR
AVDFIWVGLA ILGLWFLLPL GHNIGTIDLF GAACALGAGA CWAIYIISGQ KAGGDHGPAT
VAVGSLIAAL IFCPIGVAYN GMALFDPAIL PIALAVAILS TALPYSLEMV ALTRLPARTF
GTLMSLEPAL AAISGLVFLN EHLTLVQWLA LASIISASVG ASLTIKPKPQ LDQVT
|
|---|
| |