| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1578 |
|---|
| Symbol | |
|---|
| ID | 6087086 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 1746105 |
|---|
| End bp | 1747097 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641596648 |
|---|
| Product | LacI family transcription regulator |
|---|
| Protein accession | YP_001720324 |
|---|
| Protein GI | 170023819 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACC AGCGAGTTAC GTTACAGGAT ATCGCGTTAC TGGCGGGCGT GACTAAAATG
ACAGTCAGCC GCTATTTACG GATGCCGGAA AAAGTGGCAC CAGAAACCGG TGAGCGCATT
GCTCAGGTGA TGGCTGAAGT GAATTACAGT GCGGATCCCG AAAGTGAAAC CAGCCTAAAT
CAGAAAAGTC CGCGTATTGG TATTTTGGTC CCCTCGTTTA ATAACCAAAT CTTCTCCGAT
CTGCTGGCAG GGATTGAATC AATCACCGTT GCCAATGGCT ATCAGACGTT GGTGGTTAAC
TATAACTACA ATAAAGCGCG GGAAGAGGAG CAGATTATTA ACCTGCTCTC CTGTCAGATA
TCCGGCTTGA TCCTCACAGA TTCCGAACAT ACCTTACGCG CAGATAAATA TTTGAATGCA
GCAGAGATTC CGATTGCACA AGTGATGGAG CTGGAGCCGC AAGAGAATCG AATAACCGTT
GGTTTTAATA ACTATCAAGC GGCTTACGAC ATGACGACCA CGCTGTTGGC TAGCGGCAAG
CAACATATTG TTTATTTTGG CTCAATGTCA GATGCGCGTG ATCGTAAGCG TTATCAGGGC
TATAGCCAGG CGGTGACTGA TGCAGGCTTC ACACCGCTGC ACATTACCCC AAATAAAGTG
TCCTCCGTCT CTATTGGCGC AGGGATGCTG GCATTGGCGA GGCAAATGTA TCCCGATGTC
GATGCTATTT TTTGTACTAA TGATGATATG GCTGTCGGAG TGTTACAAGA ATGTCTGAAA
CTGGGGGTGG CAATACCGGC TGAAATGGCG ATTTCCGGTT TCCATGGGTT GGATATCGGT
CAGGCGACAA CACCAATATT AGCCAGTGTG ACCACACCGC GTTTTGAAAT GGGGAAAGTT
GCCGCCGAAA TTTTGATTAA GAAAATCAAA AAAATCCCGA CTATTGAACA GGTTGACCTG
CATTATCGTC TCTCTCTCGG TGGGACTATC TGA
|
|---|
| Protein sequence | MKNQRVTLQD IALLAGVTKM TVSRYLRMPE KVAPETGERI AQVMAEVNYS ADPESETSLN
QKSPRIGILV PSFNNQIFSD LLAGIESITV ANGYQTLVVN YNYNKAREEE QIINLLSCQI
SGLILTDSEH TLRADKYLNA AEIPIAQVME LEPQENRITV GFNNYQAAYD MTTTLLASGK
QHIVYFGSMS DARDRKRYQG YSQAVTDAGF TPLHITPNKV SSVSIGAGML ALARQMYPDV
DAIFCTNDDM AVGVLQECLK LGVAIPAEMA ISGFHGLDIG QATTPILASV TTPRFEMGKV
AAEILIKKIK KIPTIEQVDL HYRLSLGGTI
|
|---|
| |