| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1522 |
|---|
| Symbol | |
|---|
| ID | 6090732 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 1685070 |
|---|
| End bp | 1685600 |
|---|
| Gene Length | 531 bp |
|---|
| Protein Length | 176 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641596592 |
|---|
| Product | fimbrial protein |
|---|
| Protein accession | YP_001720268 |
|---|
| Protein GI | 170023763 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.14574 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAACT TCAAGAAAAG TGTATTAGTT GCTGCTGTAT TGTCTCTTTC TGCCTTCGCT
GCTAATGCTG CTGACCAAGG TAAGGGTAAA GTGACTTTTA CCGGTTCTAT CATTGAAGCA
CCTTGTTCAA TTACTTCCGA AGCGGCTGAT CAGGTTGTTG AACTGGGCCA AATTTCTACT
GCATCACTGG CTAACATGGG CTCTTCTGAA CCACGTAGTT TCAGCATTGG TCTGGAGAAA
TGTGATGTGG CTACGATGAA GAATGTGTCT GTCACCTTTG ATGGTACACC CGATGGTGTG
GATGCTGAGA TGTTGAAACT GATTGGTTTG GCTGATGGTG CAGGTATTGT GATCACCGAT
GAAGCGGGTG CGACAATTAA ACGTGGTGTG GCGTCGGTGG GCAAGACCCT GGATCAGGGC
AGTAACAGCC TGAAATTCTC TGCTTACCTG AAAGGTACCA GTGCAGATGA AGGTAGTGTG
GTCCCCGGCG AATTCAGCAG CGTAGCTAAC TTTACCCTCG CTTATAATTA A
|
|---|
| Protein sequence | MSNFKKSVLV AAVLSLSAFA ANAADQGKGK VTFTGSIIEA PCSITSEAAD QVVELGQIST
ASLANMGSSE PRSFSIGLEK CDVATMKNVS VTFDGTPDGV DAEMLKLIGL ADGAGIVITD
EAGATIKRGV ASVGKTLDQG SNSLKFSAYL KGTSADEGSV VPGEFSSVAN FTLAYN
|
|---|
| |