Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | YPK_1484 |
Symbol | |
ID | 6090916 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Yersinia pseudotuberculosis YPIII |
Kingdom | Bacteria |
Replicon accession | NC_010465 |
Strand | + |
Start bp | 1642487 |
End bp | 1643863 |
Gene Length | 1377 bp |
Protein Length | 458 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641596553 |
Product | type VI secretion system OmpA/MotB family protein |
Protein accession | YP_001720230 |
Protein GI | 170023725 |
COG category | [N] Cell motility [S] Function unknown |
COG ID | [COG1360] Flagellar motor protein [COG3455] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family [TIGR03350] type VI secretion system OmpA/MotB family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.287067 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGACA GCAGTGATTT GAACCTTGGG GGCTCAATGC CTCCTTTTGA TCAAAGCAGA AATGTGGATG AGAGTCCGCA GGCATTAGGC CGGTTCTTGC TTGATGAACC AATGACATAC CCAGATAGCA CTCAGGATAA TGCGGCCTTC ACTAGAGAGG CCCCTCATTC TGGTGCGGCA CAGCAATATG ACACGACCCT CTTACGGGGT GAAAGTGTGC AACAGCGTGT CGCTAAAGTA CTCGCATCTT CAACGCCATT ATTGGAAGCG GCACAGCCAC TATTACGTGC CTTGAGCGAG ATGCCCGCGC ATATTGGGGA TGTTTCACAG GTTCATATAT TAAAACAAAG CCTTAAAAAT GAGATCACCC TCTTTAGTGT GGTGTGTGAT GAAGCGGATA TCTCATGGAA AAAAATGGCT ATCGTCCGCT ATTGCCTGTG TACTGCGTTG GATGAAGCCG CTCACACGAT GTCGTGGGGA ATGATGGCAG GTTGGTCACA AAGCAACCTG TTGAACCATT TTGAAGGCGA TAATGACGGC GGGAATAAGT TTTTCTTATT GGTCGGCCGT CTCTCTATGA GCCCGCATGA ATATGCGGAT GGTTTAGAGG TTTTGCTGCG CATTTTAGGG CTCGGTTTTG AGGGGCGCTA CAGCATTATC GAAGATGGTG ATCGGCAATT AACTAAAATA CGCCAAGGGT TGCTGACGCT GCTCCAAAGT ACCCGAGACA CGATCCCTCC GGCACTTTCT CCGCATGGGT TGATCGCACA TCAAAACAGA AGACGGCGGG GCATTTTTGT TCCGGTGCGC GTATCCATGC TGTTGTGTGG TTTCCTCATT GTCGCGACCT TTATTGGATG TAAATACTTT CTCTCGGTAC CGGAAAGTGA CTTGCTAAAA AGAATGGGAG CATTGCAACG TGTGGTTGTG ACGCCACCCG TTGCCGCACC AAAACTTCGA CTGTCTATTT TATTAAAAGA TGAGATAGCG AAGCAGTTAG TCAGTGTTGA TGAAACGAGC AACAACAGCA AAGTCATCTT TAAAGGCGAC TCTATGTTTA TGGTCGGCTC GGATAACGTC AGACCTGAAA TGATTGACGT AATTAAACGC GTCGCGCAGG AAGTGCATCG CGTTAAAGGG GCAATCCTCA TTGTCGGGCA TACAGACTCT ATGCCGATTA ATAAACCCGG CTTCCCTAAT AACCAGGTAC TTTCCGAAAA ACGCGCGGCC AATGTTGCAC GCTATATGGA ACAGGCCGGT ATTCCAACCG ACAAAATTCG GTTTGAGGGC AAGGGGGAAA CGCAACCGGT TAGCAGCAAT GACGATGCGA CAGGACGTTC GCAAAACCGC CGCGTAGAAA TTTTTGTTAA TTATTGA
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Protein sequence | MSDSSDLNLG GSMPPFDQSR NVDESPQALG RFLLDEPMTY PDSTQDNAAF TREAPHSGAA QQYDTTLLRG ESVQQRVAKV LASSTPLLEA AQPLLRALSE MPAHIGDVSQ VHILKQSLKN EITLFSVVCD EADISWKKMA IVRYCLCTAL DEAAHTMSWG MMAGWSQSNL LNHFEGDNDG GNKFFLLVGR LSMSPHEYAD GLEVLLRILG LGFEGRYSII EDGDRQLTKI RQGLLTLLQS TRDTIPPALS PHGLIAHQNR RRRGIFVPVR VSMLLCGFLI VATFIGCKYF LSVPESDLLK RMGALQRVVV TPPVAAPKLR LSILLKDEIA KQLVSVDETS NNSKVIFKGD SMFMVGSDNV RPEMIDVIKR VAQEVHRVKG AILIVGHTDS MPINKPGFPN NQVLSEKRAA NVARYMEQAG IPTDKIRFEG KGETQPVSSN DDATGRSQNR RVEIFVNY
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