| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1459 |
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| Symbol | |
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| ID | 6091256 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | - |
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| Start bp | 1610481 |
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| End bp | 1610960 |
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| Gene Length | 480 bp |
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| Protein Length | 159 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 641596528 |
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| Product | Hcp1 family type VI secretion system effector |
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| Protein accession | YP_001720205 |
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| Protein GI | 170023700 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
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| TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.303873 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTAACA TGATTTATTT AACACTCAAG GGCAAAAAAC AGGGGTTAAT TTCGTCTGGG
TGCTCATCAA TTGACTCAAT AGGCAATAAA AGCCAAGGCA GTCACATAGA TCAGATATTT
GTACTCAGCC TTAATCACGC CATGACCCGA GAACAAAACG TCAGCCACCA CCCCATTTCT
TTTATAAAAC CCATCGATAA ATCATCCCCC TTATTAGGGG TGGCCATATC AGAAAATGAA
TTGCTTGATG CCGTTTTTGA CTTTTATAGA ACAAACAGCG CTGGTGCTTT AGAACTTTAC
TATACAATAT CCATTACCGG CGCGACAATT TCAGACATAT CAACTTCACA TAGCCATTCA
ATCACACACA ATGGCTCCCA ACCACAAGAA ACCATCTCTC TTAAATACAA AAGCATTACA
TGGAATCACA ATGTAGCAGG AACCAGTGGT TATAGCATAT GGGATGATCG CGTGTATTAA
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| Protein sequence | MANMIYLTLK GKKQGLISSG CSSIDSIGNK SQGSHIDQIF VLSLNHAMTR EQNVSHHPIS
FIKPIDKSSP LLGVAISENE LLDAVFDFYR TNSAGALELY YTISITGATI SDISTSHSHS
ITHNGSQPQE TISLKYKSIT WNHNVAGTSG YSIWDDRVY
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