| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1432 |
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| Symbol | ligA |
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| ID | 6088680 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Yersinia pseudotuberculosis YPIII |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010465 |
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| Strand | + |
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| Start bp | 1581977 |
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| End bp | 1583989 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641596496 |
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| Product | NAD-dependent DNA ligase LigA |
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| Protein accession | YP_001720179 |
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| Protein GI | 170023674 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000269504 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAATCGA TAATCCAACA AATTAATCAA CTAAGAACTT CATTGCGCCA TCATGAACAT
CAATACCATG TGCTGGATGC CCCCGAAATC CCTGATGCTG AATACGACCG TATGATGCAA
CAACTGCGTG ATTTAGAAGC ACAACATCCT GAACTGGTGA CTAATGACTC ACCGACGCAA
CGGGTTGGTG CCGCGCCTCT TGATGCCTTT GAACAGGTGG AGCACGAAGT ACCGATGCTG
TCTCTTGATA ATGTGTTTGA TGAAGAAAGT TATCTGGCCT TCGATAAACG GGTACATGAC
CGGCTTAAAA CGGCAGAACC ACTGACATTT TGTTGTGAAC TGAAGCTAGA TGGTCTGGCG
GTCAGTTTAT TGTATGAAAA TGGTGAATTG GTGAGAGCCG CGACACGTGG TGATGGCACT
ACGGGAGAAA ATATTACCGC TAATGTGCGT ACTATTCGTG CCATTCCACT GCGCCTACAT
GGGGATAATG TCCCGCGGCG CGTAGAAGTC CGTGGCGAGG TTTTTATGCC ACAAGCCGGT
TTTGAACAGC TTAACGAAGA GGCTCGTCGC AAAGGAGGGA AGGTCTTTGC CAACCCACGG
AATGCGGCGG CGGGATCGTT ACGCCAACTT GATCCCCGTA TTACAGCCAA ACGGCCACTC
ACCTTCTTCT GCTATGGTGT CGGTCTGCTG GATGGCGGCG AGCTACCCCG TAGCCATATT
CAGTGTCTGA TGCAATTTAA GGCATGGGGG TTACCCGTGA GTGAGCGGGT GAAACTCTGC
ACTGGCAGTG ATCAGGTTAT TGCTTTTTAT CGTCAAATAG AGCAAGACCG CGCAGGCTTG
GGCTTTGATA TTGATGGTGT GGTGATCAAA GTTGATGATC TTGTTTTGCA GGAGCAATTG
GGGTTTGTTG CGCGAGCCCC ACGCTGGGCA ACGGCATTTA AATTCCCGGC GCAGGAACAG
ATCACACAGG TCCGTGAAGT GGAATTTCAA GTGGGTCGTA CCGGTGCCAT TACTCCCGTA
GCCCGTCTGG AGCCGGTTCA GGTGGCTGGC GTGATTGTCA GTAATGCGAC ATTGCATAAT
GCCGATGAAA TCGAACGCCT TGGTTTGCGT ATTGGCGATA CGGTCATTGT GCGCCGTGCG
GGTGATGTGA TCCCACAAGT TGTTGGTGTG GTCATGGAAC AACGCCCTGA TGATACGAAG
GAGATCACTT TCCCAAGCCA ATGCCCAGTG TGTGGCTCCG ATATTGAACG GGTGGAAGGG
GAGGCTGTTG CCCGCTGCAC TGGCGGCTTG TTCTGTGCTG CACAGCGTAA AGAGGCACTT
AAACATTTTG TCTCCCGGCG AGCACTGGAT GTAGACGGTA TGGGCGATAA AATTATCGAA
CAACTGGTCG AGAAACAGTA TGTTGAAAAT CCAGCTGATT TATTCCAACT GACCGCAGGT
AAGTTGACGG GGTTAGATCG GATGGGGCCA AAGTCTGCGC AAAATCTGAT TGCGGCGCTG
GAGAAGGCCA AACAGACCAC CTTTGCACGC TTCTTGTATG CCTTGGGGAT CCGCGAAGTG
GGCGAAGCGA CGGCCGCAAA TTTAGCCGCT CACTTCCGCA CTCTGGATAA TCTGCGTGCA
GCAGATATTG AGACGTTAAA AAGTGTGCCG GATGTCGGCG AGGTGGTGGC TAAACATGTG
ATGAACTTCC TCAGTGAGGA ACATAATCAG AAAGTCATCG AAGAACTGGA GAAAGTGGTC
AGTTGGCCTG AGCCGCAGCA AATTGTAGTC GAGGAGATCG ATAGCCCATT CGCTGGAAAA
ACGGTGGTCC TGACGGGGTC ATTGACGATC CTTTCACGGG ATGAAGCGAA AGACCGCCTG
ACAGCATTAG GCGCAAAAGT GAGTGGCAGT GTCTCTAAAA AAACGCATCT GGTGATCGCT
GGCGAGGCGG CTGGTTCTAA ACTGGCGAAA GCGCAGGAAC TCGGAATTAA AGTTATTGAT
GAAGCTGAAA TGATCCGTTT GCTGGGTGAA TAA
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| Protein sequence | MESIIQQINQ LRTSLRHHEH QYHVLDAPEI PDAEYDRMMQ QLRDLEAQHP ELVTNDSPTQ
RVGAAPLDAF EQVEHEVPML SLDNVFDEES YLAFDKRVHD RLKTAEPLTF CCELKLDGLA
VSLLYENGEL VRAATRGDGT TGENITANVR TIRAIPLRLH GDNVPRRVEV RGEVFMPQAG
FEQLNEEARR KGGKVFANPR NAAAGSLRQL DPRITAKRPL TFFCYGVGLL DGGELPRSHI
QCLMQFKAWG LPVSERVKLC TGSDQVIAFY RQIEQDRAGL GFDIDGVVIK VDDLVLQEQL
GFVARAPRWA TAFKFPAQEQ ITQVREVEFQ VGRTGAITPV ARLEPVQVAG VIVSNATLHN
ADEIERLGLR IGDTVIVRRA GDVIPQVVGV VMEQRPDDTK EITFPSQCPV CGSDIERVEG
EAVARCTGGL FCAAQRKEAL KHFVSRRALD VDGMGDKIIE QLVEKQYVEN PADLFQLTAG
KLTGLDRMGP KSAQNLIAAL EKAKQTTFAR FLYALGIREV GEATAANLAA HFRTLDNLRA
ADIETLKSVP DVGEVVAKHV MNFLSEEHNQ KVIEELEKVV SWPEPQQIVV EEIDSPFAGK
TVVLTGSLTI LSRDEAKDRL TALGAKVSGS VSKKTHLVIA GEAAGSKLAK AQELGIKVID
EAEMIRLLGE
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