| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | YPK_1345 |
|---|
| Symbol | |
|---|
| ID | 6090278 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Yersinia pseudotuberculosis YPIII |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010465 |
|---|
| Strand | + |
|---|
| Start bp | 1483881 |
|---|
| End bp | 1486040 |
|---|
| Gene Length | 2160 bp |
|---|
| Protein Length | 719 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641596409 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001720092 |
|---|
| Protein GI | 170023587 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4590] ABC-type uncharacterized transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGTCA CCAGTGGTGG TTTGCTGGTA TTACTGACAC TGATGCTGAT ATTTGTCTAC
TTATTGTATG CCGTATTGCC ATTATTTAAA CCTGTTTCTA TCCGTTTGGA TAATCAGTTC
GTGGTGAAAC GCAATGCGCC GGCACTCGCT CTGGGAATGG ATATTCAAGG GAAAATAGCT
TATCGCATTG ATAACCAAGG TAAAGGTGTG TTTGTTCGCC TTGGTGGGCA AGGGAGTGCA
CCTGCTGGCA GTGTCATCAA TGAACAGGCG TTATCCGCGC CGCCCGTCTC ATGGAGCCGT
GCCATCGGCG GGCAGCCTTT ATATGGTGCC GGTCTGAGTA ATGGCCGCTT TACTCTGCTA
CAACCCGATT TTTCTGCCAC CCCGCCTGGC TGGCAATTTC CATTGGGCGA TCAACCGCGT
GCGCTCGATA TACAAGGCAA GCGCTTGCTG CATTTGGCGC TGGCAGAGCC GCAACCACAG
CAATTTTCCG TTGCTGCCAT TACCGATGAT AGCCGCTTGT TGGTGGGGCA ATTCACCCCG
CAGGGGCAGC AGATAACCAC TCTTGGCGCG GTGCCCGCCA CTGTCGATCA ACTGTTGCTC
GCGCCTGATG GCCGCTTACT CTATGTGCTT TCGGGCAATC AAGTGCATAT TTACCAATTG
GTCAATAGGC CATTAGAGAG TGAAAAACTT GCGAGTGACG CACCAGGTTC CGGCTGGCAG
TTACGCGAAG TGGTGTCTCT GGTGGGTGAA AAGGAAGCGC TCAGTGGGCC TTTAACGCTC
TCCTTATTGG CTGGAGGGAA ATCGCTGTTG GTGCAATCAC CGGATGGTGT GGTGACCCAA
TGGTTTGATG TGCGAAAAGG GCCAAGCCCA TCGTTCCATT TGACGCGGAT CCGCAGTTTT
ACACCAGCAA GTCAGGGAAT ACTCACCGCG GAGAACACCC GCCGGGTCTT TGCTTTGCTC
TCGCCACACG GTGAGTTATC CCTTTTTTCC AGCATCCAGT CACCGCCGTT ACTGCAATCT
ACGTTGGTCG ACGGTATCAG CCATGCCGAT TTTTCGCCGT GGGGCGATAG CCTGTTAGTG
GAAAACGCCT CCGGGTGGTC AGTTTATCGG CTAGACAACC GTTATCCGGA CATCACCTGG
CGTGGCCTGT GGCAGCCGTT ATGGTATGAA AACTACCCAG AGCCAGCCTA TGTATGGCAA
TCGAGTTCTG CCGAAGAGAG CTATCAGGCC AAATTTAGCC TGATACCGAT TATCTTCGGT
ACCTTAAAGG CGGCCGTTTA TGCCATGTTA TTCGCGGTGC CGTTGGCATT GGCGGGGGCC
ATTTACACTG CGTATTTTAT GTCTGCGGGG TTGCGGCGAG TCGTTAAACC GACCATTGAG
ATGATGGGAG CATTCCCTAC GGTGGTTATC GGTTTAATTG CAGGGATCTG GCTGGCACCG
GTGATTGAAC GTTATCTGGC GGGGATCTTG TTATTGCCGC TGCTGCTAGC CCTAGCGATT
TTATTGTGTG GTTGGGGCAG CGCTCGCCTG TCGGCCAAGA CACAATGGCC ATTACCTGCG
GGCTGGGATG TGATGGTACT GCTGCCGGTG ATCTTACTGA CCGGATGGCT GGCCCTGTGG
TTGGGGCCAT CATTGGCGGT GTGGGCGTTG GGCCAACCGT TGCATGAGTG GCTGGGGGAT
GATTACGATC AGCGCAATGC GCTGGTGGTG GGGGTGGCAA TGGGGTTCGC CTTAATCCCT
ATTATTTTTT CGCTGGCAGA GGATGCGCTG TTCAGTGTGC CCCCGTCATT AAGCCAAGGC
TCGTTGGCTC TGGGGGCAAC CCCCTGGCAA ACATTGCTCC ACGTGGTGCT GCCTTCAGCC
TACGCCGGTA TTTTCTCTGC GGTGATGATA GGTTTTGGCC GTGCGGTGGG TGAGACCATG
ATTGTGCTGA TGGCAACCGG TAACTCGCCC ATTATTGATG GCAGCATTTT CCAAGGGTTA
CGGGCGATGG CGGCCAATAT AGCCATTGAA ATGCCGGAAG CGGTGGTCGG CAGTGGGCAC
TACCGGGTGC TATTCCTGAC GGCATTGGTC TTATTCTGCT TTACGTTTTT GGTGAATACG
CTGGCAGAAG CGGTTCGCCT GCGGCTGCGT GAACGCTATC AAATGGAGCG GACAGCGTGA
|
|---|
| Protein sequence | MTVTSGGLLV LLTLMLIFVY LLYAVLPLFK PVSIRLDNQF VVKRNAPALA LGMDIQGKIA
YRIDNQGKGV FVRLGGQGSA PAGSVINEQA LSAPPVSWSR AIGGQPLYGA GLSNGRFTLL
QPDFSATPPG WQFPLGDQPR ALDIQGKRLL HLALAEPQPQ QFSVAAITDD SRLLVGQFTP
QGQQITTLGA VPATVDQLLL APDGRLLYVL SGNQVHIYQL VNRPLESEKL ASDAPGSGWQ
LREVVSLVGE KEALSGPLTL SLLAGGKSLL VQSPDGVVTQ WFDVRKGPSP SFHLTRIRSF
TPASQGILTA ENTRRVFALL SPHGELSLFS SIQSPPLLQS TLVDGISHAD FSPWGDSLLV
ENASGWSVYR LDNRYPDITW RGLWQPLWYE NYPEPAYVWQ SSSAEESYQA KFSLIPIIFG
TLKAAVYAML FAVPLALAGA IYTAYFMSAG LRRVVKPTIE MMGAFPTVVI GLIAGIWLAP
VIERYLAGIL LLPLLLALAI LLCGWGSARL SAKTQWPLPA GWDVMVLLPV ILLTGWLALW
LGPSLAVWAL GQPLHEWLGD DYDQRNALVV GVAMGFALIP IIFSLAEDAL FSVPPSLSQG
SLALGATPWQ TLLHVVLPSA YAGIFSAVMI GFGRAVGETM IVLMATGNSP IIDGSIFQGL
RAMAANIAIE MPEAVVGSGH YRVLFLTALV LFCFTFLVNT LAEAVRLRLR ERYQMERTA
|
|---|
| |